Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016443.1 Corchorus olitorius cultivar O-4 contig16476, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3233

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--46
21
2.1
21
86
0
61
11
13
52
22
1.72
15--82
27
2.5
27
90
0
100
11
10
57
20
1.63
121--226
27
3.8
27
73
7
86
6
8
55
29
1.55
102--447
54
6.3
55
68
14
160
11
8
49
30
1.69
132--480
165
2.1
167
86
1
495
12
8
48
30
1.71
471--549
24
3.3
24
74
13
72
12
5
45
36
1.64
182--528
165
2.1
164
84
4
457
12
8
46
32
1.71
380--637
135
1.9
135
95
0
462
13
8
45
32
1.73
519--814
87
3.3
87
72
15
303
12
7
47
32
1.70
600--691
27
3.4
26
82
5
112
7
4
54
33
1.49
324--663
135
2.5
134
83
5
423
13
8
45
32
1.73
783--1110
27
11.7
27
64
14
92
11
6
51
31
1.63
495--852
183
1.9
184
91
2
585
10
7
48
33
1.66
680--1956
141
9.0
141
81
8
978
12
7
48
31
1.68
924--993
30
2.4
30
83
6
83
5
2
60
31
1.35
1065--1133
27
2.5
27
83
9
77
7
2
59
30
1.39
1182--1241
27
2.2
27
90
0
93
18
5
45
31
1.71
1042--1382
168
2.0
167
94
0
601
14
6
47
31
1.69
1128--1357
54
4.1
54
66
10
131
14
7
45
31
1.74
1340--1419
33
2.4
33
81
4
81
11
3
55
30
1.53
1373--1440
27
2.5
27
82
0
73
5
2
58
32
1.37
1065--1442
168
2.3
165
84
5
517
12
6
49
31
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1403--1646
117
2.1
117
85
1
319
12
7
48
31
1.68
1427--1671
117
2.1
117
77
8
246
13
7
47
30
1.71
1633--1899
27
9.6
27
67
13
112
10
7
50
32
1.63
1637--1740
54
1.9
54
84
3
138
7
8
50
33
1.62
1641--1755
54
2.1
54
80
3
124
8
8
49
33
1.64
1685--1850
90
1.8
90
85
0
233
11
6
51
31
1.62
1778--2041
54
4.7
54
72
12
219
10
6
49
33
1.62
1282--1814
258
2.1
258
85
1
701
12
7
48
31
1.69
1920--1988
27
2.4
29
80
14
88
11
4
50
33
1.58
1922--1983
27
2.3
27
91
0
97
12
3
50
33
1.57
1577--2013
144
3.1
140
76
10
413
11
7
48
32
1.66
2073--2136
24
2.7
24
87
0
92
4
9
53
32
1.54
2510--2568
28
2.1
28
93
3
100
35
0
8
55
1.30

Tables:   1

The End!