Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016444.1 Corchorus olitorius cultivar O-4 contig16477, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73223

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
357--388
2
16.0
2
100
0
64
50
0
0
50
1.00
5502--5530
13
2.2
13
100
0
58
34
0
34
31
1.58
9665--11108
329
4.4
331
82
5
1547
33
14
17
35
1.90
9665--12538
333
8.8
327
76
9
2083
33
15
16
34
1.91
14517--14962
219
2.0
220
87
0
642
30
19
16
34
1.93
14737--15910
332
3.7
330
74
13
911
32
16
16
34
1.91
15694--16118
220
1.9
220
86
0
600
30
20
15
33
1.94
17396--17454
30
2.0
30
86
6
84
44
8
16
30
1.78
23215--23242
2
14.0
2
100
0
56
50
0
0
50
1.00
24299--24335
2
18.0
2
88
5
56
48
5
0
45
1.25
27083--27125
3
14.3
3
100
0
86
67
0
0
32
0.91
27515--27545
2
15.5
2
100
0
62
51
0
0
48
1.00
38357--38383
14
1.9
14
100
0
54
48
0
7
44
1.31
48338--48375
11
3.5
11
89
10
51
39
0
2
57
1.12
69343--70753
336
4.2
330
82
7
1593
33
13
17
35
1.89
69353--70753
335
4.2
333
83
7
1633
33
13
17
35
1.89
70878--73196
658
3.5
656
89
4
3535
32
14
17
35
1.90

Tables:   1

The End!