Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016445.1 Corchorus olitorius cultivar O-4 contig16478, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25174

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8--1768
335
5.3
328
77
9
1743
33
13
17
35
1.89
4--1799
658
2.7
652
89
2
2661
33
13
17
35
1.89
2020--4887
984
2.9
979
80
9
2541
31
14
17
36
1.90
1995--8051
321
18.9
319
74
10
4208
32
14
17
35
1.90
8268--8294
13
2.1
13
100
0
54
62
7
0
29
1.22
10728--10810
41
2.0
41
100
0
166
30
9
16
43
1.80
11331--11355
2
12.5
2
100
0
50
48
0
0
52
1.00
13443--13473
12
2.6
12
94
0
53
61
0
12
25
1.32
21411--21556
73
2.0
73
89
0
220
36
11
20
30
1.88
25116--25159
1
44.0
1
95
0
70
0
0
4
95
0.27

Tables:   1

The End!