Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016446.1 Corchorus olitorius cultivar O-4 contig16479, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118860

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
454--502
1
49.0
1
100
0
98
0
0
0
100
0.00
4044--4343
148
2.0
148
98
0
584
26
11
18
44
1.83
5304--5540
102
2.4
101
84
6
306
17
35
12
34
1.88
5249--6620
479
2.9
478
91
3
2149
16
33
12
37
1.86
16737--16770
18
1.9
17
94
5
59
79
5
14
0
0.91
16944--16981
17
2.2
17
86
9
51
57
7
2
31
1.41
22156--22207
16
3.2
16
72
5
52
0
11
17
71
1.15
31887--31920
17
2.0
17
88
0
50
55
0
35
8
1.31
38112--38141
5
5.8
5
96
4
51
0
3
16
80
0.85
40681--40710
2
14.5
2
93
6
51
50
0
3
46
1.18
44127--44177
17
3.1
16
83
8
66
31
17
23
27
1.97
51339--51384
21
2.1
21
88
11
67
47
4
4
43
1.42
67190--67222
16
2.0
17
88
5
50
3
12
0
84
0.72
84945--84978
17
1.9
18
94
5
61
2
14
0
82
0.79
87739--87763
2
12.5
2
100
0
50
48
0
0
52
1.00
111271--112858
331
4.9
330
82
5
1911
32
13
16
37
1.88
112866--114935
331
6.3
330
85
2
2544
30
13
18
37
1.89
114970--118621
331
11.0
331
89
2
5190
37
17
12
31
1.88

Tables:   1

The End!