Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016477.1 Corchorus olitorius cultivar O-4 contig16510, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37857

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1308--1352
21
2.1
21
95
0
81
20
2
31
46
1.62
1308--1352
10
4.3
11
86
11
67
20
2
31
46
1.62
1721--1750
15
1.9
16
93
6
53
53
3
0
43
1.17
10573--10635
31
2.0
31
96
0
117
39
23
19
17
1.92
11119--11259
38
3.7
38
87
0
192
21
34
18
25
1.96
14657--14804
38
3.9
38
90
1
217
22
35
18
23
1.96
17277--19158
328
5.8
321
77
8
1608
36
16
14
32
1.89
17265--19172
648
2.9
646
80
7
2091
36
16
14
32
1.89
19199--20423
322
3.8
318
80
4
1237
36
16
14
32
1.89
20479--22323
321
5.8
320
77
7
1679
36
16
14
32
1.89
23612--32497
320
28.0
317
75
10
6901
36
16
14
32
1.89
28976--32500
321
11.1
321
75
9
2853
36
16
14
32
1.89
28950--32500
652
5.6
647
78
9
3635
36
16
14
32
1.89
36227--36266
20
2.0
20
100
0
80
35
15
5
45
1.68

Tables:   1

The End!