genome.fa.s16479.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016479.1 Corchorus olitorius cultivar O-4 contig16512, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84313

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7564--7649	41	2.0	43	88	8	131	50	20	4	24	1.67
9799--9823	13	1.9	13	100	0	50	48	8	12	32	1.69
12879--12908	15	2.0	15	100	0	60	33	0	33	33	1.58
12925--12982	29	2.0	29	100	0	116	48	0	27	24	1.51
18153--18187	15	2.4	15	90	4	54	40	17	8	34	1.80
20717--20747	4	7.8	4	100	0	62	22	0	0	77	0.77
33563--33587	6	4.2	6	100	0	50	16	0	68	16	1.22
37570--37754	60	3.1	60	79	7	214	10	11	47	30	1.75
37607--37796	21	9.5	20	67	17	92	12	8	47	32	1.71
37607--37715	39	2.7	39	76	17	107	11	9	45	33	1.71
37688--37904	39	5.6	39	72	18	166	12	7	48	30	1.70
37704--37941	78	3.1	78	96	0	431	14	7	47	31	1.72
37704--38523	156	5.1	156	86	6	1172	14	7	46	31	1.72
37729--37934	39	5.3	39	73	13	199	15	6	48	30	1.69
37782--38118	177	1.9	177	92	1	568	13	8	46	31	1.73
37945--38471	39	13.5	39	69	16	229	14	7	46	31	1.72
37924--38087	21	8.2	21	64	16	55	11	9	48	30	1.72
37860--38040	99	1.8	99	91	2	301	14	8	45	31	1.75
37959--38523	78	7.2	78	94	0	925	14	6	46	31	1.71
44204--44255	27	1.9	27	88	0	77	38	7	9	44	1.66
44534--44573	21	1.9	21	89	0	62	37	10	17	35	1.83
47062--47096	18	1.9	18	88	0	52	34	54	2	8	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50240--50277	20	1.9	20	94	0	67	78	2	7	10	1.04
52793--52852	27	2.2	27	90	0	93	15	10	41	33	1.80
74548--74624	29	2.6	29	81	8	84	42	10	23	23	1.84
84267--84308	2	21.0	2	100	0	84	50	0	50	0	1.00

Tables:   1

The End!