genome.fa.s16488.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016488.1 Corchorus olitorius cultivar O-4 contig16521, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132608

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165--202	17	2.2	17	86	9	51	68	13	0	18	1.21
15208--15370	31	5.3	31	83	2	139	34	25	22	17	1.96
15208--15370	62	2.6	62	81	0	182	34	25	22	17	1.96
16541--16640	48	2.1	48	92	3	166	36	21	16	27	1.94
17174--17229	29	2.0	29	89	3	87	28	17	7	46	1.75
17422--17464	22	2.0	22	86	9	61	48	6	25	18	1.73
22746--22780	11	3.2	11	87	0	52	2	2	14	80	0.95
36008--36257	121	2.0	127	87	7	368	38	10	1	50	1.46
37335--37521	94	2.0	92	96	2	347	20	14	9	55	1.67
42043--42069	14	1.9	14	100	0	54	40	7	14	37	1.74
47090--47313	111	2.0	111	100	0	448	27	18	15	38	1.91
61349--61377	1	29.0	1	100	0	58	0	0	0	100	0.00
61668--67694	331	18.3	329	84	4	6780	33	14	16	35	1.89
67420--67986	290	1.9	292	86	2	802	33	16	14	35	1.89
67700--69378	331	5.1	330	81	5	1844	33	15	16	34	1.91
69378--74878	331	16.8	331	82	4	5616	32	15	15	35	1.90
81959--82022	32	2.0	32	90	0	101	40	14	21	23	1.90
83839--83900	21	3.0	21	97	0	115	14	38	0	46	1.45
89031--89082	3	17.3	3	100	0	104	32	0	0	67	0.91
90694--90719	1	26.0	1	100	0	52	100	0	0	0	0.00
94562--94740	79	2.3	79	93	0	295	36	14	17	31	1.90
99787--99818	13	2.5	13	100	0	64	31	6	0	62	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116581--116637	25	2.4	24	88	5	80	31	5	3	59	1.36
125789--126153	22	16.6	22	69	14	105	37	17	9	35	1.82
125991--126075	23	3.7	23	89	4	120	40	16	7	36	1.76
126259--126404	22	6.6	22	77	6	118	35	13	10	40	1.79
126237--126427	44	4.4	44	74	11	144	34	13	9	41	1.78
126259--126406	66	2.2	66	81	2	163	35	14	10	40	1.79
126234--126397	88	1.9	88	83	5	215	34	13	10	41	1.78
126432--126473	22	2.0	21	90	4	66	33	21	11	33	1.90
126513--126631	22	5.4	21	75	12	89	36	19	7	36	1.80
126513--126871	44	8.3	43	68	18	174	35	18	9	36	1.83
126680--126873	22	8.8	21	75	9	147	37	18	9	34	1.83
126662--126871	111	1.9	109	84	7	282	37	17	9	36	1.82
127962--128023	27	2.3	26	84	15	74	45	1	8	45	1.42
128707--129614	332	2.8	323	80	9	1007	33	13	16	36	1.88
129662--132608	331	9.1	320	83	6	3103	33	14	17	34	1.90

Tables:   1

The End!