genome.fa.s16491.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016491.1 Corchorus olitorius cultivar O-4 contig16524, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104617

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
241--338	24	4.1	24	100	0	196	36	8	4	51	1.51
2730--2854	61	2.0	61	100	0	250	36	25	8	29	1.85
2941--3009	30	2.3	30	85	7	88	36	23	10	30	1.88
5128--5177	6	8.5	6	93	4	84	50	14	0	36	1.43
5898--5955	29	1.9	31	89	6	93	36	6	13	43	1.71
12373--12410	18	2.1	18	90	0	58	28	10	28	31	1.90
12933--12963	2	16.0	2	93	6	55	0	48	0	51	1.00
24436--24469	6	5.7	6	89	0	50	14	2	0	82	0.79
37467--37607	67	2.1	67	95	1	255	31	9	18	41	1.82
43030--43222	96	2.0	96	95	0	350	20	26	24	27	1.99
45475--45502	14	2.0	14	100	0	56	28	7	7	57	1.52
45641--45688	23	2.1	23	100	0	96	16	20	14	47	1.82
49064--49088	2	12.5	2	100	0	50	48	0	0	52	1.00
55377--55438	31	2.0	31	100	0	124	35	9	16	38	1.81
58521--58564	18	2.4	18	96	0	79	31	18	25	25	1.97
61734--61858	59	2.1	59	93	0	214	40	13	17	28	1.88
62655--62702	24	2.0	24	100	0	96	25	8	33	33	1.86
62875--62951	29	2.6	29	85	6	93	37	20	3	37	1.71
64051--64128	29	2.6	30	83	4	95	38	6	21	33	1.79
64273--64302	14	2.1	14	100	0	60	20	30	6	43	1.77
67238--67300	24	2.6	24	100	0	126	31	25	4	38	1.77
69015--69142	53	2.4	53	100	0	256	21	27	14	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69894--69942	25	2.0	25	91	0	80	38	20	28	12	1.89
75172--75241	29	2.4	29	85	2	86	37	28	12	21	1.90
75786--75843	30	1.9	30	100	0	116	37	0	24	37	1.56
80928--80995	33	2.1	33	97	0	127	38	20	13	27	1.90
85267--85319	24	2.2	24	90	3	81	24	22	16	35	1.95
91224--91258	14	2.3	16	90	9	56	65	5	2	25	1.28
95443--95529	5	18.0	5	82	15	64	44	11	0	43	1.40
95446--95536	15	5.8	16	84	12	111	45	10	0	43	1.39
95436--95536	7	15.3	7	81	17	103	43	12	0	43	1.43
95446--95536	2	41.0	2	79	20	85	45	10	0	43	1.39
96146--100675	331	13.6	332	77	8	3448	32	14	15	37	1.88
101054--101106	27	2.0	25	82	17	63	47	3	7	41	1.50
102605--104617	326	6.1	327	88	5	2811	33	15	17	33	1.91
102605--104617	995	2.0	980	88	5	3018	33	15	17	33	1.91

Tables:   1

The End!