Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016510.1 Corchorus olitorius cultivar O-4 contig16543, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34869

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--2019
648
3.1
643
83
5
2268
36
14
14
34
1.87
2428--2457
15
1.9
16
93
6
53
53
3
0
43
1.17
2689--2782
45
2.2
44
90
7
149
38
21
5
35
1.76
8085--8156
22
3.3
20
72
11
54
47
8
18
26
1.76
8124--8225
22
4.6
22
70
17
77
39
10
17
32
1.84
8168--8268
22
4.5
22
76
3
78
38
8
16
35
1.80
8385--8447
22
2.9
21
81
6
56
36
12
12
38
1.82
8385--8440
22
2.6
21
83
5
76
37
12
12
37
1.81
8476--8523
22
2.2
22
84
0
60
33
6
22
37
1.80
8530--8576
21
2.2
21
84
0
58
40
8
19
31
1.81
8592--8662
22
3.2
22
73
15
74
35
8
14
42
1.75
12084--12133
24
2.1
24
96
0
91
42
12
18
28
1.85
12234--12381
74
2.0
74
100
0
296
40
27
12
20
1.87
23822--23904
31
2.5
32
86
11
114
34
7
14
43
1.73
24478--24587
53
2.1
53
98
0
211
49
18
9
23
1.76

Tables:   1

The End!