genome.fa.s16544.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016544.1 Corchorus olitorius cultivar O-4 contig16577, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140751

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1214--1328	32	3.6	32	71	2	97	27	25	23	23	2.00
1367--1443	29	2.6	29	81	6	93	41	15	24	18	1.89
9467--9501	15	2.2	17	90	10	56	31	0	40	28	1.57
10926--10961	1	36.0	1	100	0	72	100	0	0	0	0.00
28997--29042	20	2.3	20	81	7	58	28	28	23	19	1.98
33394--33444	16	3.1	16	76	20	59	41	0	17	41	1.50
40602--40660	29	2.0	29	90	0	91	3	30	11	54	1.53
41047--41209	31	5.3	31	82	4	132	32	25	23	18	1.97
48203--48260	29	2.0	29	100	0	116	31	17	20	31	1.96
62563--62621	19	3.0	19	80	9	82	35	22	6	35	1.80
70021--70379	180	2.0	180	92	2	596	40	13	23	22	1.89
75521--75609	29	3.1	29	98	0	169	14	20	23	41	1.89
80469--80512	20	2.2	20	100	0	88	13	9	29	47	1.74
87846--87894	23	2.1	23	81	7	55	14	2	16	67	1.33
96888--96917	6	5.0	6	100	0	60	0	66	0	33	0.92
96855--96950	51	2.0	47	84	11	124	13	52	7	27	1.67
97520--97558	19	2.1	19	95	0	69	33	0	30	35	1.58
101597--101621	13	1.9	13	100	0	50	20	32	8	40	1.81
104840--104877	18	2.1	18	90	0	58	52	15	15	15	1.75
113688--113717	14	2.1	14	100	0	60	43	16	0	40	1.48
114505--114535	12	2.6	12	100	0	62	41	0	6	51	1.27
114842--114887	24	1.9	24	100	0	92	30	4	8	56	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115171--115220	23	2.1	24	96	3	93	32	12	8	48	1.69
115868--115937	36	1.9	36	91	0	113	60	8	10	21	1.55
122555--122627	29	2.5	30	93	6	123	26	8	2	63	1.36
131744--131805	30	2.1	30	96	0	115	45	4	24	25	1.73
139722--139786	27	2.4	27	81	0	85	35	30	18	15	1.92

Tables:   1

The End!