Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016586.1 Corchorus olitorius cultivar O-4 contig16619, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41884

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2572--2644
27
2.7
27
86
0
101
32
30
20
16
1.95
2966--3001
10
3.8
10
85
14
58
61
0
0
38
0.96
2966--3002
18
2.1
18
100
0
74
62
0
0
37
0.96
3095--3119
12
2.1
12
100
0
50
24
20
16
40
1.91
4979--5380
201
2.0
201
100
0
804
28
13
13
44
1.82
6295--6342
6
7.7
6
93
6
78
0
16
0
83
0.65
6295--6342
13
3.8
13
89
10
73
0
16
0
83
0.65
12392--12427
6
5.7
6
87
12
54
0
13
2
83
0.76
12392--12431
20
2.0
20
95
0
71
0
15
2
82
0.77
12392--12431
14
2.9
14
85
7
55
0
15
2
82
0.77
13137--13186
14
3.6
14
80
20
61
36
12
8
44
1.71
13671--13811
46
3.0
46
90
1
210
30
13
8
47
1.72
15958--16209
36
6.9
36
84
5
296
37
17
16
28
1.92
16209--16573
54
6.8
54
87
3
472
38
11
19
31
1.87
16249--16573
109
3.0
108
89
2
458
39
10
19
31
1.86
16181--16573
163
2.5
160
82
8
471
37
11
18
31
1.87
16487--16571
27
3.2
27
62
12
68
32
11
18
36
1.88
16592--16617
7
3.7
7
100
0
52
11
0
11
76
1.01
19495--19549
28
2.0
28
92
3
94
47
25
16
10
1.79
39750--39791
21
2.0
22
90
4
68
23
30
11
33
1.91

Tables:   1

The End!