Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016595.1 Corchorus olitorius cultivar O-4 contig16628, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49608

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1680--1827
45
3.3
45
96
0
269
32
12
31
24
1.92
13647--13710
28
2.3
28
100
0
128
17
20
21
40
1.91
25403--25453
25
2.0
25
85
7
68
39
0
0
60
0.97
25373--25455
22
3.8
21
74
19
73
38
1
1
59
1.13
28580--28807
74
3.1
74
92
3
363
30
16
17
35
1.92
30974--31025
27
1.9
27
84
0
68
59
5
25
9
1.51
31692--31748
21
2.7
21
94
0
96
49
12
1
36
1.51
33733--33764
3
11.0
3
93
6
57
34
0
0
65
0.93
37915--38040
22
5.7
22
71
10
78
36
10
11
41
1.76
37913--38040
44
2.9
44
80
4
116
35
10
12
41
1.77
37915--38040
66
1.9
65
80
9
148
36
10
11
41
1.76
38099--38145
2
25.5
2
79
16
57
44
2
0
53
1.12
47506--47831
2
165.0
2
90
2
516
48
0
50
0
1.07
47840--47879
19
2.1
19
85
0
53
17
2
40
40
1.63
48167--48247
40
2.0
40
90
4
128
34
7
18
39
1.79
48207--49153
335
2.9
328
87
4
1343
33
15
15
34
1.90
49310--49608
7
44.3
7
93
6
496
15
0
44
40
1.46

Tables:   1

The End!