Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016617.1 Corchorus olitorius cultivar O-4 contig16650, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13941

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49--91
21
2.0
21
86
0
59
37
9
6
46
1.63
242--448
106
1.9
108
84
1
274
43
21
14
20
1.87
1977--2033
28
2.0
28
89
0
87
45
14
3
36
1.61
2057--2110
26
2.1
26
100
0
108
31
3
3
61
1.31
2064--2121
26
2.2
26
87
6
82
34
5
5
55
1.45
5675--5707
12
2.8
12
90
4
50
72
0
0
27
0.85
7933--7961
10
3.0
10
95
5
51
27
0
0
72
0.85
9260--9340
33
2.4
34
85
2
110
33
6
17
43
1.74
9286--9365
40
1.9
42
85
7
110
36
5
17
41
1.71
9521--9598
33
2.4
33
86
4
104
32
6
19
42
1.76
9636--9745
55
2.0
55
82
8
134
33
22
16
27
1.95
9756--9959
54
3.8
52
89
4
300
36
21
16
25
1.94
9734--9959
108
2.1
108
91
0
362
36
20
15
26
1.93
10144--10489
111
3.1
110
87
4
507
44
16
17
21
1.87
10069--10511
37
12.0
37
79
4
437
44
15
17
22
1.87
10059--10513
74
6.1
74
87
1
554
43
15
17
23
1.87
11299--11460
87
1.9
87
85
2
227
25
22
11
41
1.86
11580--11618
18
2.2
17
86
4
51
2
20
5
71
1.17
12256--12320
14
4.8
13
83
12
69
38
9
9
43
1.69

Tables:   1

The End!