Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016647.1 Corchorus olitorius cultivar O-4 contig16680, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124261

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--33
2
16.5
2
100
0
66
48
0
0
51
1.00
255--528
137
2.0
137
95
0
494
26
22
23
26
2.00
4590--4616
4
6.8
4
100
0
54
25
0
22
51
1.48
10453--10486
13
2.7
13
90
4
52
82
0
17
0
0.67
10452--10485
16
2.2
15
94
5
59
85
0
14
0
0.60
15112--15466
115
3.1
115
88
0
503
29
24
20
25
1.99
24432--24456
2
12.5
2
100
0
50
48
0
52
0
1.00
34127--34205
2
40.0
2
87
2
70
39
1
55
3
1.26
55526--55564
3
13.0
3
88
0
60
64
0
30
5
1.15
56526--56554
5
6.0
5
92
8
51
0
41
41
17
1.49
57512--57539
3
9.3
3
100
0
56
67
0
0
32
0.91
58536--58569
2
17.0
2
87
0
50
47
0
2
50
1.16
58519--58569
26
2.0
26
92
7
86
45
1
3
49
1.32
69807--69846
20
2.0
20
95
0
71
37
25
17
20
1.94
78463--78498
4
9.0
4
87
0
54
25
5
0
69
1.10
88836--88860
2
12.5
2
100
0
50
0
52
0
48
1.00
89342--89372
2
15.5
2
93
0
53
0
51
0
48
1.00
110839--111098
105
2.5
106
88
3
368
41
8
8
41
1.66
111335--111593
102
2.5
105
89
6
402
43
9
7
39
1.65
111608--111641
10
3.3
10
87
4
50
85
0
8
5
0.75
111723--111758
13
2.8
13
86
0
54
16
41
8
33
1.78
111760--111838
40
2.0
40
92
0
131
41
15
13
29
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111938--111969
13
2.5
13
94
0
55
31
6
50
12
1.65
113184--113232
24
2.0
24
92
0
80
42
10
18
28
1.83
117200--117302
52
2.0
53
96
1
190
33
5
30
30
1.81
123584--123644
28
2.1
30
87
9
90
36
6
24
32
1.81

Tables:   1

The End!