genome.fa.s16891.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016891.1 Corchorus olitorius cultivar O-4 contig16924, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  195982

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
689--751	31	2.1	31	82	5	76	33	11	11	44	1.75
895--967	30	2.5	30	84	2	85	45	10	16	27	1.81
6249--6283	1	35.0	1	88	0	52	94	0	5	0	0.32
7817--7849	15	2.2	15	100	0	66	39	21	12	27	1.88
16677--16706	12	2.6	11	90	10	51	0	10	0	90	0.47
20826--20858	12	2.5	13	90	9	50	72	6	21	0	1.05
32560--32590	16	1.9	16	93	0	53	48	6	45	0	1.28
36770--36799	11	2.7	11	94	0	51	40	3	20	36	1.69
38869--39158	103	2.8	104	83	6	311	37	8	11	43	1.70
41245--41294	25	2.0	26	96	4	93	52	4	4	40	1.39
41414--41479	27	2.4	26	82	7	78	43	3	9	43	1.51
41532--41578	10	4.8	10	86	2	60	44	2	17	36	1.60
41545--41583	10	3.9	10	93	0	51	43	0	17	38	1.50
47599--47629	15	2.1	15	93	0	53	41	19	16	22	1.89
49676--49761	41	2.1	41	93	0	145	26	9	15	48	1.74
51448--51884	176	2.5	177	87	1	581	35	15	14	34	1.88
62225--62312	45	2.0	44	97	2	167	38	13	10	37	1.79
64700--64742	20	2.2	20	100	0	86	53	18	9	18	1.70
69456--69488	10	3.4	10	91	8	59	93	6	0	0	0.33
70449--70494	23	2.0	23	86	4	65	58	15	2	23	1.48
77401--77428	14	2.0	14	100	0	56	7	21	7	64	1.43
78353--78395	5	8.6	5	100	0	86	39	39	0	20	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80449--80484	2	18.0	2	100	0	72	50	0	0	50	1.00
81072--81099	6	4.7	6	100	0	56	0	32	0	67	0.91
85778--85802	12	2.1	12	100	0	50	0	8	0	92	0.40
102689--102744	26	2.1	28	83	6	71	23	17	23	35	1.95
104029--104079	2	25.5	2	95	0	93	47	0	0	52	1.00
113072--113168	31	3.1	31	80	0	86	36	24	11	27	1.90
113711--113789	31	2.5	31	86	6	106	37	18	11	31	1.87
121290--121342	24	2.2	24	93	3	90	30	15	11	43	1.81
126215--126246	16	2.0	17	88	11	50	65	15	0	18	1.27
128079--128159	40	2.0	40	87	0	117	29	13	17	39	1.88
128431--128468	20	1.9	20	84	10	51	18	7	2	71	1.23
128971--129022	21	2.5	21	90	0	77	23	28	23	25	1.99
129366--129420	28	2.0	28	82	13	69	69	1	9	20	1.25
131089--131250	60	2.6	60	81	3	162	32	16	15	35	1.90
132602--132641	21	1.9	21	94	0	71	50	15	25	10	1.74
137693--137733	21	1.9	22	85	5	57	43	29	17	9	1.80
140281--140325	22	2.1	22	84	12	58	46	0	0	53	1.00
140494--140546	26	2.0	26	100	0	106	22	20	15	41	1.89
142382--142406	13	1.9	13	100	0	50	56	0	0	44	0.99
143678--143725	23	2.0	24	84	11	64	35	0	10	54	1.35
143990--144021	14	2.3	14	100	0	64	21	28	0	50	1.49
154783--154856	29	2.5	30	84	4	87	28	12	10	48	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155010--155092	31	2.7	31	94	0	139	44	9	13	32	1.76
155273--155400	61	2.1	61	94	0	220	51	3	7	36	1.49
155398--155758	180	2.0	180	90	3	568	51	1	10	36	1.48
156183--156248	31	2.1	32	86	8	91	33	12	12	42	1.79
156384--156454	29	2.4	30	88	4	99	43	14	19	22	1.87
156506--156551	6	8.2	6	79	11	53	2	2	15	80	0.91
156505--156551	11	4.3	11	81	7	60	2	2	17	78	0.94
157170--157214	5	8.8	5	95	4	81	40	0	0	60	0.97
161844--161883	20	2.0	20	95	0	71	42	25	10	22	1.84
162032--162587	206	2.7	200	90	3	862	33	15	16	34	1.90
174075--174102	9	3.1	9	100	0	56	0	10	35	53	1.36
175738--175773	19	1.9	18	88	5	54	27	22	8	41	1.82
190981--191131	22	6.9	22	67	11	85	36	9	16	37	1.82
191216--191635	22	19.0	22	71	14	136	39	10	16	34	1.82
191469--191633	87	1.9	86	82	9	210	43	10	13	32	1.78
191507--191633	66	1.9	65	82	4	157	42	11	14	32	1.80
191733--192115	22	17.6	22	68	14	145	38	9	14	37	1.80
191714--192120	44	9.4	45	67	15	162	38	10	15	36	1.81
191728--191875	66	2.2	66	80	3	163	41	9	15	33	1.79
191888--191950	23	2.8	22	85	4	81	36	3	19	41	1.67
192079--192157	22	3.6	21	75	16	63	36	15	15	32	1.88
192145--192187	21	2.0	22	86	8	63	53	2	13	30	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193670--193701	3	11.0	3	93	6	57	65	0	0	34	0.93
194157--194190	2	16.5	2	93	6	59	50	2	0	47	1.16
194661--194855	22	8.9	22	76	5	162	34	11	16	36	1.85

Tables:   1

The End!