Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016916.1 Corchorus olitorius cultivar O-4 contig16949, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106059

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8576--8619
2
22.0
2
100
0
88
50
0
0
50
1.00
14659--14931
44
6.3
42
75
11
205
35
16
10
38
1.83
14652--14931
22
12.9
21
71
10
138
35
17
10
37
1.84
25935--26333
7
56.4
7
94
3
521
22
0
21
56
1.42
26254--26342
28
2.9
32
85
6
78
30
1
17
50
1.54
26441--26518
33
2.4
33
86
0
102
33
5
16
44
1.70
26581--27341
54
14.3
54
88
4
1088
36
21
14
27
1.93
27676--27866
37
5.2
36
71
12
131
41
13
18
26
1.87
27305--27781
234
2.0
234
99
0
936
41
15
17
26
1.89
27690--27871
74
2.5
74
90
3
271
41
13
18
26
1.87
27746--27867
37
3.3
37
80
4
165
41
12
19
26
1.87
28828--28891
17
3.9
16
78
15
69
1
15
3
79
0.93
28822--28870
23
2.1
24
84
3
64
2
16
4
77
1.01
28840--28891
6
8.2
6
76
19
52
0
17
1
80
0.80
28834--28891
26
2.4
23
88
8
80
0
17
1
81
0.78
29531--29595
14
4.8
13
78
12
69
36
9
7
46
1.65
29531--29595
28
2.4
27
85
10
87
36
9
7
46
1.65
32548--32598
23
2.3
23
79
3
59
23
1
27
47
1.63
34307--34350
23
1.9
23
90
0
70
38
20
29
11
1.87
34840--34888
23
2.2
22
89
7
73
22
30
12
34
1.91
46521--46967
223
2.0
224
99
0
887
36
6
7
48
1.58
47546--47619
28
2.7
27
76
10
80
64
0
1
33
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48119--48189
37
1.9
37
94
0
124
38
8
16
36
1.80
53476--53565
45
2.0
45
100
0
180
22
20
15
42
1.89
56585--56618
17
1.9
18
88
5
52
41
14
8
35
1.77
61388--61439
24
2.1
26
82
7
63
21
0
36
42
1.53
67799--67869
30
2.5
28
86
13
108
22
30
15
30
1.95
70108--70259
76
2.0
76
81
7
175
17
28
27
26
1.97
71699--71738
5
7.8
5
84
15
55
57
2
0
40
1.12
76391--76803
35
11.8
35
85
3
474
39
9
19
31
1.84
89391--89506
54
2.1
54
93
3
198
34
24
20
20
1.97
91404--91466
30
2.1
29
85
11
83
46
11
12
30
1.77
98773--98826
21
2.6
21
82
5
56
18
27
29
24
1.98
98760--98910
76
2.0
76
80
7
173
17
29
28
24
1.97
104466--104512
24
2.1
22
85
14
62
46
19
8
25
1.77
104735--104792
25
2.4
24
82
2
62
50
22
8
18
1.74

Tables:   1

The End!