Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016969.1 Corchorus olitorius cultivar O-4 contig17002, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24365

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6071--6116
6
7.8
6
97
2
85
32
17
0
50
1.47
7360--7406
22
2.1
23
88
4
69
17
17
25
40
1.90
8798--8839
22
1.9
22
90
0
66
11
21
28
38
1.89
10923--11370
223
2.0
225
96
0
819
22
23
13
40
1.89
11589--11671
33
2.5
33
92
0
130
30
20
0
49
1.49
11652--11701
25
2.0
25
88
0
73
34
24
0
42
1.55
11697--11763
33
2.0
33
91
0
107
32
19
1
46
1.59
11819--11875
26
2.2
26
83
0
69
26
19
0
54
1.44
11795--11991
59
3.3
59
75
18
219
27
18
0
52
1.49
11795--12026
119
1.9
119
98
0
446
28
18
0
53
1.51
11938--11993
26
2.2
26
83
0
67
26
19
0
53
1.45
11818--11999
55
3.1
55
71
21
190
27
18
0
53
1.48
12052--12234
26
6.7
27
74
20
148
30
19
0
49
1.52
12072--12138
33
2.0
33
88
0
98
28
20
0
50
1.48
12105--12234
25
4.9
27
78
18
112
32
20
0
46
1.56
11960--12307
108
3.3
105
81
13
348
30
19
1
48
1.58
14945--14986
10
4.1
10
84
6
57
9
2
4
83
0.88
14946--14989
21
2.1
22
91
8
74
9
4
4
81
0.96
16120--16168
21
2.3
21
82
6
55
40
16
28
14
1.87
20541--20576
19
1.9
18
88
5
54
27
22
8
41
1.82

Tables:   1

The End!