Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017021.1 Corchorus olitorius cultivar O-4 contig17054, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19287

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1952--1981
15
2.1
15
93
6
53
63
6
16
13
1.50
2336--2390
21
2.6
21
88
0
74
16
21
45
16
1.85
5524--5613
29
3.0
29
82
12
110
41
12
7
38
1.71
5656--5717
23
2.9
21
79
9
70
38
14
9
37
1.79
5867--5934
29
2.3
29
92
2
109
32
38
11
17
1.86
6114--6153
15
2.6
16
92
4
64
65
10
10
15
1.48
11016--12440
47
28.5
49
81
9
954
27
20
5
47
1.71
11016--11742
55
13.6
55
88
6
854
26
19
5
48
1.71
11737--11866
32
4.1
32
91
3
208
23
23
2
50
1.61
11737--11869
65
2.1
64
95
1
239
24
23
2
49
1.61
12831--12886
24
2.3
23
76
8
58
50
21
19
8
1.75
15462--15519
27
2.1
27
81
6
64
51
22
15
10
1.73
17790--17841
27
1.9
27
88
0
77
36
17
17
28
1.92
18337--18417
31
2.6
33
75
11
89
39
19
13
27
1.89
19237--19275
15
2.5
16
87
4
53
28
0
2
69
1.02

Tables:   1

The End!