genome.fa.s17055.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017055.1 Corchorus olitorius cultivar O-4 contig17088, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15002

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273--319	25	1.9	24	91	4	76	55	6	6	31	1.51
310--390	39	2.0	40	90	2	128	38	3	6	51	1.45
634--681	6	7.8	6	97	2	87	50	0	14	35	1.44
2507--2907	140	2.9	140	98	0	777	44	11	18	25	1.83
2838--2976	69	2.0	69	98	0	269	48	12	15	23	1.79
2698--3116	209	2.0	209	99	0	820	45	11	17	25	1.83
5445--5491	2	24.0	2	91	4	78	48	0	2	48	1.13
7622--7692	23	2.8	23	66	29	54	57	0	15	26	1.38
7639--7715	27	3.0	26	72	14	79	58	0	15	25	1.38
7615--7807	88	2.1	87	94	3	244	56	0	17	25	1.41
7677--7753	38	2.1	35	90	7	118	51	0	19	28	1.47
7624--8497	131	6.6	137	69	22	397	57	0	17	25	1.41
7789--7850	20	3.2	20	88	4	92	56	0	16	27	1.40
7727--8524	101	8.1	100	72	21	505	57	0	17	24	1.40
7799--7856	20	3.1	18	85	7	71	51	0	17	31	1.45
7712--8521	50	16.3	48	77	16	473	57	0	17	25	1.41
7938--7972	18	2.0	18	88	5	54	60	0	8	31	1.27
8200--8254	22	2.5	22	77	19	60	60	0	16	23	1.36
8210--8290	23	3.3	24	72	23	78	56	1	16	25	1.47
8019--8521	173	2.9	175	89	7	754	58	0	17	24	1.41
8298--8345	20	2.5	20	80	19	57	56	0	20	22	1.43
8316--8391	34	2.3	33	95	2	134	60	0	18	21	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8223--8490	131	2.0	132	89	4	407	58	0	17	24	1.42
8355--8427	23	3.0	23	71	21	69	56	0	15	28	1.40
8440--8527	19	5.2	18	67	21	64	55	0	15	28	1.41
8489--8558	18	3.9	18	71	12	54	57	2	14	25	1.51
8604--8694	48	1.9	46	86	8	130	49	0	23	27	1.50
8869--8960	27	3.4	27	71	5	78	50	0	19	30	1.48
8856--8966	55	2.0	54	84	5	143	46	1	20	30	1.61

Tables:   1

The End!