Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017087.1 Corchorus olitorius cultivar O-4 contig17120, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38032

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2420--2454
1
35.0
1
100
0
70
0
0
0
100
0.00
5059--5093
17
2.1
17
89
10
54
34
42
17
5
1.73
5938--5971
16
2.1
16
94
0
59
47
20
23
8
1.78
6990--7053
33
1.9
33
87
0
92
39
12
23
25
1.90
13343--13519
58
3.1
58
94
0
318
40
17
24
17
1.91
16884--16920
16
2.4
16
95
4
67
16
18
24
40
1.90
16900--17137
38
6.3
38
87
0
316
28
16
24
31
1.96
17606--17770
81
2.0
80
95
1
294
35
11
22
30
1.90
18656--18689
16
2.1
16
94
0
59
47
20
23
8
1.78
18968--18996
15
1.9
15
100
0
58
27
17
20
34
1.95
23263--23352
45
2.0
45
97
0
171
30
17
5
46
1.71
24750--24874
65
1.9
65
95
0
223
23
28
23
25
2.00
25521--25548
14
2.0
14
100
0
56
50
14
14
21
1.78
25535--25670
60
2.3
60
97
0
254
33
19
20
27
1.96
25541--25639
29
3.3
29
67
15
85
32
18
21
28
1.96
25574--25673
31
3.3
31
70
16
109
32
21
21
26
1.98
25712--25815
31
3.4
31
69
15
108
25
20
18
35
1.95
25714--25874
60
2.7
61
89
3
238
27
19
16
36
1.93
27093--27117
5
5.0
5
100
0
50
20
0
0
80
0.72
30088--30117
15
1.9
16
93
6
53
56
3
0
40
1.16
31599--31663
15
4.3
14
71
22
51
38
36
15
9
1.79
31919--31983
31
2.2
29
89
10
96
32
26
12
29
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33098--33187
44
2.0
44
93
4
155
36
11
3
48
1.55
33376--33418
16
2.9
15
80
10
52
44
30
6
18
1.76
35858--35887
12
2.4
13
88
11
53
13
6
13
66
1.43

Tables:   1

The End!