Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017159.1 Corchorus olitorius cultivar O-4 contig17192, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41440

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21010--21082
17
4.4
17
68
26
50
20
6
1
71
1.17
21029--21107
5
14.8
5
74
19
54
21
3
1
73
1.06
21029--21141
55
2.2
53
81
10
126
22
2
3
71
1.14
22197--22264
29
2.3
29
76
2
73
16
20
19
44
1.87
23235--23334
52
1.9
52
93
0
173
41
9
16
34
1.79
23278--23450
60
2.9
59
80
3
159
36
15
15
31
1.89
26086--29684
645
5.7
624
72
14
1725
33
15
16
34
1.90
27041--27630
302
1.9
303
86
4
825
34
14
16
34
1.89
27797--29684
324
5.8
320
76
9
1447
33
15
16
34
1.91
27796--29501
645
2.6
641
80
5
1901
33
15
16
34
1.90
27797--29684
322
5.8
319
77
7
1737
33
15
16
34
1.91
29793--30951
326
3.5
325
79
8
1149
32
15
16
35
1.90
31757--31841
32
2.7
32
88
0
134
21
24
25
28
1.99
31876--31953
30
2.6
30
77
2
95
41
14
26
17
1.88
34994--35053
29
2.0
30
90
3
95
43
5
0
51
1.23
35019--35066
18
2.5
19
78
18
55
41
2
0
56
1.11
40471--40531
31
2.0
31
93
0
104
16
24
29
29
1.96

Tables:   1

The End!