Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017165.1 Corchorus olitorius cultivar O-4 contig17198, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68051

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7795--7837
19
2.4
18
85
11
61
16
11
20
51
1.75
9602--9724
13
9.8
13
71
16
82
36
7
23
32
1.83
9641--9730
37
2.4
37
90
0
153
31
6
24
37
1.81
9848--9916
36
1.9
36
87
0
102
30
14
23
31
1.94
11997--12072
39
1.9
40
94
2
136
28
30
22
18
1.97
12204--12428
45
5.0
45
94
2
396
11
28
23
36
1.90
12204--12428
92
2.5
91
96
1
416
11
28
23
36
1.90
16043--16195
52
3.0
52
95
0
272
17
30
22
29
1.97
23906--24065
13
12.8
13
70
17
99
34
8
24
33
1.85
23952--24071
37
3.2
37
93
0
204
30
8
24
36
1.85
24189--24257
36
1.9
36
87
0
102
30
14
23
31
1.94
25817--25841
11
2.3
11
100
0
50
0
8
0
92
0.40
27022--27054
2
16.5
2
100
0
66
48
0
0
51
1.00
29123--29205
36
2.3
36
97
0
157
27
7
21
43
1.79
33113--33194
27
3.0
27
89
0
110
4
40
24
30
1.76
33194--33232
18
2.2
18
100
0
78
23
20
23
33
1.97
41098--41179
9
8.8
9
73
15
51
50
3
2
43
1.33
41096--41179
30
2.8
30
79
0
105
50
3
2
44
1.32
44250--44378
64
2.0
64
89
3
197
30
26
17
25
1.98
44356--44403
23
2.1
23
96
0
87
27
33
6
33
1.82
53783--53822
12
3.4
12
82
3
55
52
0
5
42
1.23
53906--53942
19
1.9
19
88
0
56
40
10
16
32
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53971--54012
22
2.0
21
86
13
59
33
9
19
38
1.84
61625--61661
17
2.2
17
90
0
56
78
2
16
2
0.98

Tables:   1

The End!