Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017257.1 Corchorus olitorius cultivar O-4 contig17290, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37341

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5242--5298
30
1.9
30
100
0
114
15
19
21
43
1.87
5916--6018
51
2.0
50
80
12
113
22
18
13
45
1.84
6541--6611
37
1.9
37
94
0
124
40
8
15
35
1.78
9050--9120
37
1.9
37
94
0
124
38
8
16
36
1.80
10064--10102
20
2.0
19
90
5
60
84
7
7
0
0.77
10301--10349
16
3.0
16
96
3
89
55
36
8
0
1.30
10338--10381
16
2.8
16
86
10
63
54
22
13
9
1.67
10301--10410
32
3.4
32
77
5
105
51
31
10
6
1.60
10339--10398
16
3.8
14
81
18
57
53
23
11
11
1.70
10618--10710
32
2.9
32
85
3
107
38
31
10
19
1.86
10661--10712
16
3.2
16
68
10
52
36
34
9
19
1.84
11042--11075
2
17.0
2
100
0
68
50
0
0
50
1.00
11947--12080
66
2.0
66
98
0
259
50
11
10
27
1.70
13705--13763
31
2.0
29
90
9
93
42
15
13
28
1.85
15060--15090
16
1.9
16
93
0
53
19
6
12
61
1.53
18454--18546
31
3.0
31
98
0
177
27
22
7
41
1.81
18582--18769
93
2.0
93
88
0
277
32
12
2
52
1.52
22247--22276
13
2.4
12
94
5
51
90
0
6
3
0.56
24416--24503
29
3.0
29
93
0
140
39
21
19
19
1.92
24735--25194
58
7.8
58
93
1
740
41
15
15
28
1.87
24735--25194
177
2.6
176
92
2
755
41
15
15
28
1.87
24764--25194
235
1.8
236
93
1
756
41
15
14
28
1.86

Tables:   1

The End!