Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017261.1 Corchorus olitorius cultivar O-4 contig17294, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72153

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3124--3197
28
2.6
28
82
4
78
17
18
25
37
1.93
3480--3509
12
2.5
12
94
0
51
3
16
33
46
1.64
7681--7731
19
2.7
18
85
8
66
60
0
0
39
0.97
8085--8121
19
2.0
19
89
5
58
32
2
0
64
1.07
8240--8266
13
2.1
13
100
0
54
40
0
14
44
1.46
9143--9183
20
2.0
20
85
0
55
56
0
7
36
1.27
9836--9925
45
2.1
44
83
6
112
40
21
5
33
1.76
11378--11415
20
1.9
20
88
0
58
36
10
10
42
1.74
15850--15899
25
2.0
25
100
0
100
36
44
8
12
1.71
23077--23200
65
1.9
65
85
6
171
41
10
9
37
1.72
23076--23261
22
8.5
22
73
12
134
36
13
10
40
1.78
23163--23262
21
4.6
21
77
10
94
32
15
10
43
1.79
23206--23280
21
3.6
20
82
8
80
25
20
9
45
1.80
23215--23286
22
3.4
22
80
3
67
23
18
9
48
1.77
23522--23614
45
2.1
45
93
4
161
31
13
12
41
1.83
24727--24917
99
1.9
100
90
1
303
41
9
13
35
1.77
25099--25155
22
2.6
22
100
0
114
22
19
24
33
1.97
28352--28490
33
3.9
34
78
12
163
40
18
15
25
1.90
31078--31114
19
1.9
19
94
0
65
59
0
35
5
1.20
34005--34153
39
3.8
39
87
5
212
30
17
16
34
1.93
36236--36270
18
1.9
18
88
0
52
40
8
28
22
1.84
36516--36621
31
3.3
31
66
7
95
39
16
20
23
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36873--36905
15
2.2
15
94
0
57
69
3
12
15
1.30
38886--38926
21
1.9
22
85
5
57
4
26
4
63
1.35
40090--40137
22
2.2
22
85
3
62
14
14
10
60
1.59
46333--46380
21
2.2
21
85
3
60
58
10
14
16
1.63
47610--47660
20
2.4
22
83
6
61
43
1
1
52
1.23
47608--47660
24
2.2
24
82
0
61
43
1
1
52
1.23
49950--49999
23
2.1
23
85
3
64
36
12
8
44
1.71
50002--50139
52
2.7
52
91
2
233
31
17
17
33
1.93
53314--53413
48
2.1
48
100
0
200
34
16
19
31
1.93
54656--54693
20
1.9
20
88
0
58
44
10
5
39
1.61
57613--57831
49
4.4
50
94
0
370
21
27
11
38
1.89
57892--58440
64
8.6
64
87
3
732
25
22
14
36
1.93
60925--60960
19
1.9
19
88
5
56
25
22
8
44
1.80
68383--68466
27
3.3
27
66
19
79
25
28
11
34
1.91
68373--68591
49
4.4
50
96
0
397
22
27
11
37
1.90
68373--68591
99
2.2
99
95
1
395
22
27
11
37
1.90
68666--69150
64
7.6
63
85
4
571
26
21
15
36
1.93
68666--69150
128
3.8
128
86
2
632
26
21
15
36
1.93
72054--72114
15
4.3
14
85
8
70
37
16
6
39
1.75
72054--72114
28
2.1
28
85
8
79
37
16
6
39
1.75

Tables:   1

The End!