Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017373.1 Corchorus olitorius cultivar O-4 contig17406, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32465

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3912--3945
10
3.5
10
88
8
52
79
0
20
0
0.73
3908--3957
18
2.9
17
78
18
59
78
0
20
2
0.86
4814--4968
54
2.9
54
94
0
274
26
18
25
30
1.98
4941--4996
28
2.0
28
100
0
112
32
17
17
32
1.94
4887--5050
82
2.0
82
93
0
283
28
18
23
30
1.97
5023--5378
35
10.0
35
84
4
437
25
12
19
41
1.87
6062--6092
2
15.5
2
93
0
53
48
3
0
48
1.17
7006--7085
23
3.5
22
73
15
74
26
6
1
66
1.23
7006--7134
46
2.9
46
86
7
162
26
7
1
64
1.30
7054--7137
19
4.3
18
73
18
60
28
9
1
60
1.35
7006--7130
42
2.9
39
81
13
117
26
8
1
64
1.31
7036--7103
27
2.5
26
73
15
66
25
8
1
64
1.30
7149--7208
24
2.5
24
81
5
68
26
20
1
51
1.56
9360--9398
20
2.0
20
84
0
51
56
10
2
30
1.46
10066--10121
28
2.0
28
96
0
103
28
12
32
26
1.93
20219--20257
15
2.6
15
95
0
69
48
17
15
17
1.81
20675--20715
19
2.2
19
100
0
82
19
9
14
56
1.66
27736--27764
14
2.1
14
100
0
58
6
93
0
0
0.36
27739--27763
13
1.9
13
100
0
50
4
96
0
0
0.24
30969--30997
2
14.5
2
100
0
58
48
0
0
51
1.00
31992--32334
72
4.6
71
75
12
274
29
42
8
19
1.80
32088--32211
36
3.5
35
72
5
115
28
38
8
25
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32085--32454
155
2.4
148
87
3
497
27
44
7
21
1.78

Tables:   1

The End!