Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017541.1 Corchorus olitorius cultivar O-4 contig17574, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16681

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--6313
656
9.6
656
87
5
8607
31
15
18
34
1.92
6--6313
987
6.4
988
87
5
8781
31
15
18
34
1.92
4--6313
336
19.2
332
87
5
8698
31
15
18
34
1.92
6354--8700
330
7.1
329
87
3
3275
32
14
18
34
1.91
9669--9716
11
4.1
11
77
15
51
64
6
0
29
1.18
9663--9716
25
2.2
25
87
12
76
62
5
0
31
1.18
12272--12306
2
17.5
2
93
0
61
51
0
0
48
1.00
15733--15760
11
2.5
11
100
0
56
89
0
10
0
0.49

Tables:   1

The End!