Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017564.1 Corchorus olitorius cultivar O-4 contig17597, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102323

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--3513
332
10.7
331
84
4
4141
33
15
16
34
1.90
1--3484
974
3.5
970
85
4
4199
33
15
16
34
1.90
3654--4267
322
1.9
316
82
3
766
32
14
15
36
1.89
7053--7224
27
6.1
27
82
10
209
46
18
11
23
1.81
7042--7225
58
3.2
58
92
0
305
46
17
11
23
1.82
22645--22681
12
3.1
12
92
0
56
8
40
16
35
1.78
40200--40493
132
2.2
132
76
7
299
28
24
20
25
1.99
51460--51514
28
2.0
27
86
10
76
12
10
27
49
1.74
71079--71127
17
2.9
16
85
8
62
22
20
22
34
1.97
71173--71221
23
2.1
23
100
0
98
42
8
16
32
1.77
75337--75361
6
4.2
6
100
0
50
0
36
48
16
1.46
77488--77585
49
2.0
49
97
0
187
23
12
15
48
1.78
92988--93034
22
2.1
22
100
0
94
27
19
12
40
1.88
100112--100172
24
2.8
21
76
16
61
47
1
4
45
1.34
100133--100171
20
1.9
20
84
5
51
48
0
5
46
1.24
100176--102144
317
6.3
300
74
14
864
36
16
14
32
1.89
100633--102323
317
5.3
320
79
7
1739
35
16
14
33
1.89

Tables:   1

The End!