Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017693.1 Corchorus olitorius cultivar O-4 contig17726, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58951

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5148--5177
15
2.0
15
100
0
60
60
13
13
13
1.60
8062--8086
12
2.1
12
100
0
50
32
36
24
8
1.84
12158--12206
18
2.6
19
87
6
64
32
16
14
36
1.89
18862--18919
19
2.9
19
87
5
80
36
12
22
29
1.90
36616--36792
46
3.8
46
94
0
300
15
19
22
42
1.89
36802--36942
70
2.0
70
95
0
255
31
18
12
37
1.88
42820--43378
45
12.5
45
85
2
705
33
23
19
23
1.97
42815--43378
90
6.3
89
91
3
796
33
23
19
23
1.97
47047--47082
2
18.0
2
100
0
72
50
0
0
50
1.00
49022--49436
215
1.9
220
82
7
531
32
11
14
41
1.81
49972--50173
100
2.0
101
87
2
291
22
24
16
36
1.94
50088--50778
116
5.8
116
81
9
833
21
28
18
31
1.97
50018--50742
362
2.0
361
96
0
1351
21
28
18
31
1.97

Tables:   1

The End!