Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017694.1 Corchorus olitorius cultivar O-4 contig17727, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20254

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
789--817
15
1.9
15
100
0
58
48
27
10
13
1.75
1402--1547
33
4.5
31
78
10
123
27
8
21
42
1.82
3322--3363
21
2.0
21
95
0
75
21
19
26
33
1.97
6902--7023
50
2.4
50
86
2
165
34
22
22
21
1.97
12466--12499
17
2.1
17
94
5
61
38
17
0
44
1.49
12515--12587
26
2.8
27
72
14
71
28
19
1
50
1.56
12699--12890
25
7.6
25
80
12
198
25
21
0
52
1.51
12679--12886
75
2.8
74
82
7
242
25
21
0
51
1.54
12679--13188
26
19.6
25
72
17
260
25
20
1
52
1.55
12902--13187
27
10.4
26
72
16
145
25
20
1
52
1.56
14501--17468
154
19.3
154
91
1
4451
40
19
18
21
1.91
14501--20254
308
18.5
306
82
6
6708
40
19
18
21
1.91
14501--20254
462
12.4
460
83
6
7085
40
19
18
21
1.91
17410--17522
54
2.1
54
88
0
163
43
21
13
22
1.87
17254--17676
208
2.0
208
91
1
688
42
20
16
20
1.89
17462--20254
154
18.2
154
89
2
4111
41
19
18
20
1.91

Tables:   1

The End!