Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017759.1 Corchorus olitorius cultivar O-4 contig17792, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13623

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
326--699
41
9.2
41
93
2
594
36
6
27
28
1.83
326--699
81
4.6
81
92
1
606
36
6
27
28
1.83
1924--2057
62
2.1
63
93
2
225
46
7
14
31
1.73
2354--2389
2
18.0
2
88
0
54
50
5
0
44
1.25
2354--2389
16
2.2
16
100
0
72
50
5
0
44
1.25
2380--12411
999
10.1
992
79
8
5133
33
15
16
34
1.90
4702--4731
2
15.0
2
100
0
60
50
0
0
50
1.00
2378--12922
334
31.7
332
81
7
8494
33
15
16
34
1.90
2378--12922
663
15.9
661
82
7
8530
33
15
16
34
1.90
12643--13215
293
2.0
294
86
2
821
32
16
15
34
1.91
12353--13544
621
1.9
623
86
3
1713
33
16
16
34
1.91

Tables:   1

The End!