genome.fa.s17846.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017846.1 Corchorus olitorius cultivar O-4 contig17879, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139946

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421--795	202	1.9	202	85	3	522	36	10	18	34	1.85
2104--2479	200	1.9	203	83	5	494	36	9	15	37	1.81
3841--4207	198	1.9	198	85	2	513	35	9	18	35	1.84
5549--5915	198	1.9	197	84	6	492	35	10	19	34	1.85
53--8075	855	9.4	855	89	2	11886	33	13	16	35	1.89
8071--10389	854	2.7	854	90	2	3699	34	13	16	34	1.88
9763--10356	320	1.8	323	80	4	725	34	15	16	33	1.91
11153--14977	330	11.6	328	71	12	1934	36	15	14	33	1.88
13771--14656	313	2.8	312	80	9	943	38	14	13	33	1.86
13457--14656	640	1.9	625	82	5	1516	37	15	13	33	1.86
15330--15381	15	3.3	15	83	5	59	57	1	0	40	1.10
18520--18549	10	3.0	10	95	0	51	10	26	0	63	1.26
31746--31913	31	5.5	31	73	9	159	33	19	18	28	1.95
31750--31915	60	2.8	60	91	0	269	34	18	18	27	1.95
31954--32118	31	5.5	30	70	11	131	27	20	20	32	1.97
31983--32083	29	3.4	28	68	20	80	25	20	21	31	1.98
31954--32114	60	2.7	60	95	0	277	26	19	19	33	1.96
54069--54112	19	2.2	20	88	4	63	18	13	20	47	1.82
54660--55140	39	12.3	39	92	0	658	9	36	9	44	1.70
62578--62738	78	2.1	78	95	0	286	50	1	14	33	1.54
64314--64358	22	2.0	22	100	0	90	37	4	26	31	1.76
71093--71146	5	10.6	5	82	11	65	40	1	1	55	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75687--75723	19	2.1	18	90	10	58	0	16	0	83	0.64
75674--75723	19	2.6	19	84	6	57	2	16	0	82	0.77
77017--77092	21	3.6	21	83	3	98	42	10	7	39	1.69
77013--77136	22	5.8	21	74	4	95	43	12	7	37	1.70
77013--77129	43	2.7	43	87	1	153	42	12	7	36	1.72
77013--77182	22	7.9	21	67	16	71	38	12	7	41	1.71
77140--77182	20	2.1	20	91	4	68	23	13	9	53	1.69
89220--89268	26	2.0	23	85	14	64	22	10	16	51	1.74
92816--92896	42	1.9	42	94	0	144	46	14	8	29	1.75
92966--93081	59	2.0	58	88	5	173	37	3	24	34	1.72
93922--93953	11	2.6	13	85	14	50	0	25	12	62	1.30
108041--108146	52	2.0	52	89	3	160	33	16	9	40	1.80
115536--115616	41	2.0	41	82	4	101	32	20	9	37	1.86
133878--133943	22	3.0	22	85	10	91	25	18	22	33	1.97
134042--134079	15	2.5	16	87	8	53	63	0	31	5	1.17
134916--134949	13	2.7	13	95	4	61	61	0	0	38	0.96
136673--136697	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1

The End!