Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017855.1 Corchorus olitorius cultivar O-4 contig17888, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30092

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
232--267
8
4.6
8
89
6
56
0
13
0
86
0.58
2360--2426
30
2.1
30
83
10
80
34
5
5
53
1.50
12626--12721
49
2.0
48
80
15
110
39
18
15
26
1.91
12886--13047
65
2.5
65
90
0
252
36
25
18
19
1.95
13675--13777
47
2.2
45
83
11
120
39
24
16
19
1.91
13736--13817
38
2.1
39
84
2
103
34
26
19
19
1.96
13983--16507
323
7.6
325
81
8
2090
34
14
15
35
1.88
15256--16517
329
3.8
330
81
5
1499
33
13
16
36
1.89
15256--16517
660
1.9
659
84
3
1633
33
13
16
36
1.89
16573--18811
330
6.8
326
80
5
2319
33
14
15
36
1.88
19079--19962
466
1.9
466
81
5
1088
34
13
16
35
1.87
20279--20303
12
2.1
12
100
0
50
56
0
8
36
1.29
19542--21824
330
7.0
326
76
9
1907
33
14
15
36
1.88
20356--21824
665
2.2
657
84
5
1917
33
14
15
35
1.89
23465--23519
15
3.6
15
95
2
92
12
9
12
65
1.47
23980--27309
333
10.2
330
78
6
2967
33
14
15
35
1.89
25417--27298
980
1.9
966
86
5
2635
33
14
15
35
1.88
27691--28789
322
3.4
323
82
7
1130
32
15
15
37
1.89
27608--28819
332
3.7
329
81
6
1285
32
15
15
36
1.89

Tables:   1

The End!