Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017901.1 Corchorus olitorius cultivar O-4 contig17934, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64712

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8--43
2
18.0
2
100
0
72
50
0
0
50
1.00
675--720
2
21.5
2
87
12
65
45
2
4
47
1.34
5851--5926
30
2.5
30
82
2
89
42
11
19
26
1.86
5861--5930
30
2.3
30
87
0
95
37
12
18
31
1.89
8925--8958
18
1.9
18
88
5
52
29
5
8
55
1.54
13244--13285
15
2.7
15
92
3
66
64
14
9
11
1.50
15786--15920
68
2.0
68
88
0
198
11
16
31
40
1.85
16848--16881
18
1.9
18
88
5
52
29
5
8
55
1.54
17418--17529
56
2.0
56
98
0
215
39
9
14
36
1.79
19409--19451
22
1.9
23
95
4
79
37
13
23
25
1.92
22316--22387
30
2.4
31
90
4
105
38
25
11
25
1.88
23097--23139
22
1.9
23
95
4
79
37
13
23
25
1.92
27634--27669
6
6.0
6
100
0
72
16
66
0
16
1.25
27663--27718
27
2.1
27
83
6
69
8
66
5
19
1.39
27704--27732
6
4.8
6
100
0
58
13
68
0
17
1.20
27692--27743
18
2.9
18
82
0
68
7
63
9
19
1.48
29299--29328
2
15.0
2
100
0
60
50
0
0
50
1.00
29547--29641
47
2.0
47
95
0
172
29
13
14
42
1.84
32970--33177
104
2.0
103
93
0
353
27
29
7
35
1.85
42394--42419
2
13.0
2
100
0
52
50
0
0
50
1.00
44372--44409
2
19.5
2
94
5
69
50
0
0
50
1.00
51784--51828
24
1.9
23
90
4
72
57
0
4
37
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52456--52483
2
14.0
2
100
0
56
50
0
0
50
1.00
59121--59183
3
21.0
3
77
6
65
33
4
34
26
1.78
60755--60786
1
32.0
1
100
0
64
0
0
0
100
0.00
61828--61891
6
10.7
6
96
0
110
17
12
67
3
1.35
62788--63066
22
12.7
21
68
14
111
39
10
15
35
1.80

Tables:   1

The End!