Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017907.1 Corchorus olitorius cultivar O-4 contig17940, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40292

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5455--5509
27
2.0
28
82
3
67
18
18
20
43
1.88
9353--9385
10
3.0
11
86
13
50
42
0
3
54
1.15
9381--9421
21
1.9
22
85
5
57
41
2
0
56
1.13
9353--9433
23
3.6
23
74
14
78
44
1
1
53
1.16
9835--10427
27
21.9
27
73
10
390
22
29
25
22
1.99
10196--10268
29
2.5
29
90
0
110
16
28
27
27
1.97
12454--12518
29
2.3
28
79
12
71
16
7
27
47
1.74
17308--17484
92
1.9
92
88
0
264
37
33
17
11
1.86
17674--17703
16
1.9
16
93
6
53
50
26
0
23
1.50
18029--18288
131
2.0
131
90
0
412
49
2
10
37
1.51
19653--19722
25
2.6
28
71
17
67
70
2
12
14
1.29
19962--19991
15
2.0
15
100
0
60
40
20
0
40
1.52
23339--23475
70
2.0
68
84
2
175
24
13
13
48
1.78
23906--23969
4
16.0
4
93
0
56
37
0
12
50
1.41
23906--23967
8
7.8
8
94
0
79
37
0
12
50
1.41
23906--23982
12
6.6
12
86
5
86
35
0
14
50
1.43
23925--23982
4
15.0
4
83
7
75
29
0
18
51
1.47
25865--25899
16
2.2
16
89
0
52
37
0
37
25
1.57
34678--34940
128
2.1
128
97
0
499
38
20
10
31
1.86
36241--36281
19
2.2
19
86
4
57
63
4
7
24
1.40
36580--36649
30
2.6
26
81
18
97
44
14
24
17
1.85
39113--39200
31
2.8
31
94
1
149
40
12
3
43
1.59

Tables:   1

The End!