genome.fa.s18078.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018078.1 Corchorus olitorius cultivar O-4 contig18111, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40190

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8380--8419	19	2.0	20	90	4	64	17	7	42	32	1.77
8533--8587	25	2.2	25	96	0	101	29	12	3	54	1.55
8544--8598	25	2.2	25	90	0	83	27	14	5	52	1.63
8885--8911	2	13.5	2	100	0	54	48	0	0	51	1.00
12009--12051	16	2.8	16	92	3	70	25	9	16	48	1.75
28229--28317	45	2.0	45	86	0	124	28	13	21	37	1.91
28325--28455	60	2.2	61	84	5	169	32	12	19	35	1.90
28392--28645	72	3.5	72	84	2	316	30	14	16	37	1.89
28529--28759	114	2.0	116	82	2	286	32	15	16	35	1.90
28457--28831	186	2.0	188	84	1	484	32	15	16	36	1.90
28646--29199	72	7.7	72	89	3	704	33	13	16	36	1.88
28433--28903	258	1.8	258	86	0	690	32	15	15	36	1.89
30635--30760	60	2.1	60	89	1	189	31	13	19	34	1.91
30698--30950	72	3.5	72	87	3	334	30	16	16	36	1.92
30908--30995	45	2.0	45	86	0	122	29	15	19	35	1.93
30768--31119	189	1.9	189	84	0	470	31	15	16	36	1.90
30697--31211	261	2.0	260	84	1	681	31	15	16	35	1.91
30951--31409	218	2.1	216	85	3	618	33	13	16	36	1.88
30951--31409	72	6.3	72	89	2	591	33	13	16	36	1.88
35585--35842	94	2.7	94	81	5	283	33	13	13	38	1.85
36067--36166	53	1.9	53	83	2	130	36	26	19	19	1.95
36208--36469	94	2.8	93	86	4	357	31	16	15	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36561--36976	94	4.4	94	82	4	489	33	15	14	36	1.88
36545--36976	189	2.3	188	85	2	571	34	15	14	36	1.88
36839--37259	147	2.9	147	90	0	637	31	13	14	39	1.86
37357--37488	71	1.9	71	88	0	201	32	15	13	38	1.86
37578--37835	94	2.7	94	83	3	306	29	14	16	39	1.88
37428--38029	323	1.8	326	84	6	822	30	13	15	40	1.86
38125--38354	96	2.4	94	79	5	250	30	13	14	41	1.85
37673--38823	465	2.5	463	84	6	1468	31	13	14	39	1.86
38565--38910	189	1.8	188	86	4	509	30	15	15	38	1.89
38565--38910	94	3.7	93	81	7	412	30	15	15	38	1.89
38989--39235	94	2.6	94	80	1	280	33	14	15	37	1.87
38669--39245	319	1.8	319	84	3	802	32	14	15	37	1.88
39128--39536	147	2.8	147	85	3	536	32	12	15	38	1.85
39605--39941	95	3.5	93	83	4	404	32	16	16	35	1.90

Tables:   1

The End!