Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018138.1 Corchorus olitorius cultivar O-4 contig18171, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55421

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--39
2
19.5
2
100
0
78
51
0
0
48
1.00
906--935
2
15.0
2
100
0
60
50
0
0
50
1.00
6227--6271
22
2.0
23
91
4
74
17
24
2
55
1.53
23592--23618
1
27.0
1
100
0
54
0
0
0
100
0.00
23886--24116
87
2.6
87
87
2
311
34
20
19
25
1.96
42357--42412
27
2.1
27
100
0
112
23
17
3
55
1.58
48052--48076
12
2.1
12
100
0
50
36
0
0
64
0.94
48237--50458
323
6.9
322
84
6
2695
35
17
14
32
1.91
48237--50460
645
3.5
641
85
5
2915
35
17
14
32
1.91
52041--52128
19
4.3
19
68
18
52
75
0
20
4
0.98
52063--52124
14
4.5
13
76
13
52
74
0
19
6
1.03
52048--52129
28
3.1
27
74
10
80
75
0
19
4
0.98
52040--52129
25
3.5
24
72
19
74
74
0
21
4
0.99
52110--52161
25
2.0
25
92
7
86
65
7
19
7
1.43
52353--53576
324
3.8
321
90
3
1897
34
18
14
32
1.91
53405--53744
168
2.0
168
89
2
524
34
14
13
37
1.85
52364--53578
641
1.9
640
91
2
1961
34
17
14
32
1.91
53081--54067
491
2.0
490
90
2
1561
34
17
14
34
1.89
53571--55420
323
5.7
324
88
2
2553
34
17
14
33
1.90
53571--55406
647
2.8
644
87
2
2533
34
17
14
32
1.91

Tables:   1

The End!