genome.fa.s18155.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018155.1 Corchorus olitorius cultivar O-4 contig18188, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151545

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3314--3421	51	2.1	51	98	0	207	20	21	15	42	1.89
4432--4497	30	2.2	31	83	8	91	40	31	6	21	1.77
32830--32883	27	2.0	27	92	0	90	16	27	16	38	1.90
32929--32987	19	3.0	19	78	9	73	35	8	20	35	1.83
34254--34317	32	2.1	31	88	5	94	40	17	25	17	1.90
54044--54100	19	2.8	20	84	5	71	35	17	7	40	1.77
60883--61272	201	1.9	200	97	0	735	23	22	14	38	1.91
62286--62312	14	1.9	14	100	0	54	14	14	7	62	1.51
64999--65044	15	3.1	15	70	17	51	50	8	17	23	1.74
65979--66076	51	1.9	51	87	0	142	33	26	20	19	1.96
70017--70080	30	2.1	30	85	5	83	43	12	3	40	1.58
75197--75564	184	2.0	184	98	0	709	22	13	25	39	1.90
76556--76606	26	2.0	26	88	0	75	29	17	25	27	1.98
76630--78427	52	34.2	52	87	5	2344	28	13	23	34	1.93
76887--76957	33	2.1	34	92	5	117	30	14	21	33	1.92
76630--76922	27	11.2	26	90	3	369	31	12	21	34	1.90
76630--78427	78	22.8	78	87	5	2343	28	13	23	34	1.93
76630--78427	26	68.3	26	86	6	2044	28	13	23	34	1.93
79961--84881	336	14.7	336	79	8	5063	35	17	13	33	1.89
87133--87348	97	2.2	96	82	4	258	26	15	17	40	1.89
87374--88140	238	3.2	237	78	6	642	20	15	23	40	1.90
87134--88696	144	10.9	144	72	8	896	22	15	22	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87271--88287	190	5.3	189	74	8	573	21	15	22	39	1.91
87187--89023	286	6.5	281	71	10	863	22	15	22	39	1.92
87134--88696	48	32.7	47	73	7	610	22	15	22	39	1.92
88257--88398	49	2.9	49	88	5	198	22	11	28	38	1.88
88706--89026	48	6.7	47	76	7	215	22	16	23	37	1.94
102138--102165	14	2.0	14	100	0	56	14	14	21	50	1.78
106313--106344	13	2.5	13	95	5	57	68	6	0	25	1.12
113145--113169	13	1.9	13	100	0	50	16	12	8	64	1.49
115795--115861	35	2.0	33	85	5	89	34	10	10	44	1.73
125320--125350	15	2.1	15	93	0	53	6	35	0	58	1.24
129251--129289	19	2.1	19	100	0	78	25	10	25	38	1.87
132106--132138	13	2.5	13	95	0	57	42	18	15	24	1.88
138471--138524	12	4.6	12	79	6	58	33	29	7	29	1.85
138479--138524	3	15.3	3	81	0	56	32	30	6	30	1.83

Tables:   1

The End!