Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018160.1 Corchorus olitorius cultivar O-4 contig18193, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64045

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18634--18797
59
2.8
58
83
4
204
34
14
21
29
1.93
23232--23273
3
13.3
3
85
9
57
30
35
0
33
1.58
39170--39209
19
2.1
19
86
9
55
55
0
0
45
0.99
48563--48694
31
4.3
31
79
1
122
35
25
21
17
1.95
50106--50132
8
3.4
8
100
0
54
25
22
0
51
1.48
51339--52602
332
3.8
330
78
6
1207
33
14
15
36
1.88
52604--53868
329
3.8
330
81
5
1419
32
15
15
37
1.88
54262--54288
2
13.5
2
100
0
54
48
0
0
51
1.00
55097--55139
22
2.0
22
85
0
59
34
13
32
18
1.90
55964--58959
335
9.0
330
85
4
3800
32
14
16
35
1.90
55964--58959
668
4.5
663
86
4
3775
32
14
16
35
1.90
59215--62538
669
5.0
658
77
8
3127
36
16
13
33
1.88
61172--62554
333
4.1
331
81
6
1476
35
16
14
33
1.89
62853--64043
332
3.6
328
87
4
1577
35
16
14
34
1.88

Tables:   1

The End!