Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018178.1 Corchorus olitorius cultivar O-4 contig18211, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53465

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17413--17479
35
2.0
32
83
11
82
31
1
17
49
1.56
30482--30516
11
3.2
11
83
0
52
77
17
5
0
0.96
37655--37683
1
29.0
1
100
0
58
0
0
0
100
0.00
45070--45151
24
3.4
24
98
0
155
31
24
21
21
1.98
45073--45142
14
5.6
14
67
25
57
34
22
20
22
1.97
45479--49314
325
11.6
323
72
13
2125
33
14
16
35
1.89
45479--49318
654
5.8
645
73
13
2266
33
14
16
35
1.89
47173--47297
66
1.9
65
90
4
198
31
11
14
43
1.80
47245--49264
650
3.1
648
85
5
2554
33
14
16
35
1.89
47323--49317
975
2.0
979
83
6
2502
33
14
16
34
1.90
48767--50225
574
2.5
573
85
3
1957
33
13
16
35
1.88

Tables:   1

The End!