Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018278.1 Corchorus olitorius cultivar O-4 contig18311, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13296

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
874--909
2
18.0
2
94
0
63
47
0
0
52
1.00
2030--2132
52
2.0
52
100
0
206
33
25
9
32
1.88
2333--2374
22
1.9
22
85
0
57
45
19
14
21
1.85
3584--3923
166
2.0
166
93
2
585
37
6
3
52
1.45
4601--4713
36
3.2
36
74
9
106
26
21
9
42
1.83
4624--4982
63
5.8
64
83
10
259
26
20
8
45
1.78
4696--4960
63
4.3
63
86
7
352
26
19
8
45
1.79
4786--4840
27
2.0
27
100
0
110
25
20
7
47
1.75
4849--5243
27
14.6
27
77
10
315
25
20
7
46
1.77
4724--5243
208
2.5
208
90
3
780
25
20
7
46
1.77
4930--5229
63
4.9
63
89
8
474
25
21
8
45
1.79
4876--5229
181
2.0
181
95
0
636
25
20
8
45
1.79
4994--5243
118
2.1
117
92
0
428
24
20
8
46
1.77
9164--9188
13
1.9
13
100
0
50
44
16
24
16
1.86
12538--12911
124
3.0
124
92
0
606
28
17
16
37
1.91

Tables:   1

The End!