Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018375.1 Corchorus olitorius cultivar O-4 contig18408, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32162

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1184--1223
20
2.0
20
100
0
80
35
25
20
20
1.96
2991--3086
48
2.0
48
100
0
192
25
16
22
35
1.95
3208--3237
10
3.0
10
95
0
51
86
0
13
0
0.57
4105--4152
22
2.3
20
82
13
53
43
10
10
35
1.73
5860--5918
27
2.2
27
100
0
118
27
16
13
42
1.86
11175--11201
2
13.5
2
100
0
54
48
0
0
51
1.00
11508--11542
11
3.2
11
91
0
61
80
17
2
0
0.84
11677--11713
19
1.9
19
100
0
74
27
10
8
54
1.63
13714--13765
25
2.1
25
100
0
104
65
3
11
19
1.40
17816--17883
31
2.2
31
89
0
109
35
5
14
44
1.70
21602--32157
330
31.6
333
82
7
11317
32
17
16
33
1.92
23949--24062
8
11.9
10
75
12
82
26
5
5
63
1.37
23949--24023
29
2.5
29
95
4
132
28
5
5
61
1.40
23981--24067
45
1.9
45
100
0
174
25
4
4
65
1.31
24066--32157
331
24.4
329
86
5
10048
32
17
16
33
1.92

Tables:   1

The End!