genome.fa.s18523.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018523.1 Corchorus olitorius cultivar O-4 contig18556, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  185503

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
758--824	31	2.2	31	89	5	100	34	23	25	16	1.95
1444--2075	315	2.0	315	96	0	1165	34	13	13	37	1.84
2007--2339	178	1.9	178	88	2	508	35	14	15	35	1.87
5917--5981	32	2.0	32	90	0	103	33	12	29	24	1.92
6425--6453	2	14.5	2	100	0	58	51	48	0	0	1.00
14416--14465	25	2.0	25	96	0	91	14	32	18	36	1.90
16969--17040	29	2.4	30	83	2	101	33	18	12	36	1.88
19256--19295	2	20.0	2	100	0	80	50	0	0	50	1.00
26361--26414	4	13.5	4	100	0	108	50	24	0	25	1.50
26560--26602	18	2.3	19	84	8	52	55	13	6	23	1.62
26560--26602	19	2.3	19	84	8	52	55	13	6	23	1.62
26833--26862	12	2.5	12	94	0	51	13	40	0	46	1.43
28382--28730	180	1.9	180	88	1	520	38	17	21	22	1.93
31885--31972	33	2.5	36	78	12	103	37	13	17	31	1.88
31953--32348	30	12.7	30	87	7	504	28	20	20	30	1.97
31960--32336	127	3.0	127	90	0	601	28	20	20	30	1.98
33952--34020	31	2.2	31	92	2	111	37	15	10	36	1.82
34691--34948	106	2.5	106	89	2	387	41	7	8	41	1.65
38002--38051	24	2.2	22	83	16	59	2	30	4	64	1.23
48983--49020	19	2.0	19	94	0	67	57	0	2	39	1.12
51701--51746	22	2.1	22	100	0	92	41	4	36	17	1.69
52626--52794	68	2.5	68	81	4	207	34	24	2	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62050--62398	177	2.0	177	97	0	653	32	22	12	32	1.92
62845--62935	45	2.0	45	100	0	182	32	19	10	36	1.87
64714--64854	76	1.9	76	84	3	194	16	34	26	23	1.95
66214--66287	26	2.9	26	82	7	91	9	9	20	60	1.55
67000--67470	47	10.0	47	84	3	597	17	29	19	33	1.95
66999--67470	48	10.0	48	83	4	566	17	29	19	33	1.95
67000--67470	95	5.0	95	86	2	619	17	29	19	33	1.95
74591--74630	11	3.7	11	86	3	55	35	20	0	45	1.51
75819--75852	2	17.0	2	100	0	68	50	0	0	50	1.00
75852--75892	2	20.5	2	100	0	82	0	0	48	51	1.00
76470--76522	21	2.5	21	81	0	61	16	22	43	16	1.88
79572--79628	28	2.1	28	90	3	89	70	10	10	8	1.35
86208--86249	21	2.0	22	90	4	68	42	38	7	11	1.69
86407--86445	20	2.0	20	94	0	69	30	2	10	56	1.46
86412--86456	11	4.3	11	80	11	58	28	0	13	57	1.36
106559--107298	35	21.3	35	80	6	734	44	20	18	17	1.87
106559--107298	105	7.1	106	83	5	814	44	20	18	17	1.87
109128--109158	15	2.1	15	94	5	55	35	6	6	51	1.53
117361--117418	2	30.0	2	83	13	77	48	1	0	50	1.11
117571--117600	10	2.9	10	95	5	51	0	33	0	66	0.92
121042--121087	20	2.3	20	88	3	67	15	15	19	50	1.79
121050--121267	113	1.9	112	87	5	323	27	14	16	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123831--124379	274	2.0	274	99	0	1089	34	16	20	29	1.94
125385--125556	22	7.9	22	75	11	140	39	8	13	37	1.76
131936--132106	88	1.9	88	97	0	324	26	18	21	33	1.96
135989--136022	7	4.7	7	85	7	50	11	0	0	88	0.52
135989--136025	15	2.5	15	91	8	58	13	0	0	86	0.57
138032--138065	18	1.9	18	88	5	52	38	5	5	50	1.51
149306--149349	23	1.9	23	95	0	79	52	6	15	25	1.68
151330--151380	17	3.1	16	86	8	66	35	21	21	21	1.96
151758--151839	35	2.4	35	80	8	89	60	3	12	23	1.47
152106--152145	13	3.0	13	81	3	53	40	0	2	57	1.12
159342--159407	32	2.1	32	86	10	93	68	4	15	12	1.36
159619--159658	17	2.3	18	86	4	55	0	35	7	57	1.27
161263--161306	2	22.0	2	100	0	88	0	50	0	50	1.00
163698--163783	39	2.3	38	84	6	104	41	12	12	32	1.81
164799--164832	18	1.9	18	88	5	52	47	2	32	17	1.63
164615--164930	159	2.0	159	89	1	481	32	13	25	28	1.94
174370--174427	29	2.0	30	89	3	91	44	3	3	48	1.36
179100--179168	26	2.6	25	81	6	75	13	24	30	31	1.93
182953--183867	48	19.4	47	91	2	1372	48	4	16	29	1.67
182956--183867	189	4.8	189	92	2	1424	48	4	16	29	1.67
182953--183859	237	3.8	236	94	1	1489	48	4	16	29	1.67

Tables:   1

The End!