Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018750.1 Corchorus olitorius cultivar O-4 contig18783, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64600

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
182--315
21
6.4
21
92
1
191
26
26
17
29
1.97
10362--10434
33
2.2
32
85
4
101
47
2
21
27
1.64
10401--10991
47
12.3
47
84
6
754
47
4
18
30
1.68
10535--10579
22
2.0
22
91
0
72
53
0
24
22
1.46
14207--14308
50
2.0
50
90
0
159
43
10
19
26
1.84
16103--16142
21
1.9
21
84
0
53
27
15
20
37
1.92
32689--32755
28
2.4
28
94
0
125
43
4
2
49
1.38
41517--41557
19
2.2
19
91
4
66
65
0
0
34
0.93
42455--42492
19
2.0
19
94
0
67
55
0
13
31
1.38
43129--43364
119
2.0
122
84
5
311
25
24
13
36
1.92
53817--53901
34
2.5
34
81
7
109
35
9
18
36
1.84
55214--55320
39
2.8
38
91
4
171
28
16
6
48
1.71
58615--58672
18
3.1
17
79
18
62
32
13
20
32
1.92
59682--59857
64
2.7
64
87
2
246
30
23
13
33
1.92
59754--59960
103
2.0
103
90
1
326
31
23
14
30
1.94
59689--60013
167
1.9
169
88
2
485
29
23
14
32
1.94
59857--60044
64
2.9
64
87
0
295
27
23
15
32
1.95
62252--62292
7
5.2
8
91
8
59
2
12
0
85
0.70
63556--63597
15
2.7
15
92
3
66
64
14
9
11
1.50

Tables:   1

The End!