Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018788.1 Corchorus olitorius cultivar O-4 contig18821, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  153335

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
311--358
16
3.1
15
79
8
51
70
0
20
8
1.12
2414--2486
37
2.0
37
94
0
128
42
12
8
36
1.72
3281--3311
2
16.0
2
93
6
55
51
0
0
48
1.00
4792--4871
29
2.8
29
94
0
133
35
27
12
25
1.92
4792--4891
29
3.4
28
87
6
103
38
26
13
23
1.91
12802--12843
15
2.7
15
92
3
66
64
14
9
11
1.50
19965--20001
18
2.1
18
89
0
56
37
10
5
45
1.62
37158--37212
17
3.2
17
84
5
74
34
1
10
52
1.47
41116--41154
11
3.4
11
83
13
51
7
5
10
76
1.13
41114--41154
12
3.3
13
83
10
50
7
4
9
78
1.10
41281--41315
2
17.5
2
100
0
70
48
0
0
51
1.00
45445--45492
24
2.0
25
83
4
62
16
6
6
70
1.28
47103--47145
21
2.0
22
95
4
79
13
55
20
9
1.66
48866--48916
22
2.4
22
86
3
77
7
58
23
9
1.56
49752--49799
24
2.0
25
83
4
62
16
6
6
70
1.28
52804--52850
21
2.2
21
85
7
60
12
14
0
72
1.13
64836--64899
16
4.1
16
75
4
67
42
0
3
54
1.16
69759--69919
77
2.1
78
91
1
270
49
1
13
34
1.53
70643--70803
53
3.0
53
99
0
313
11
11
27
50
1.72
81005--81058
26
2.1
26
93
6
92
25
5
11
57
1.55
95661--95822
80
2.0
79
90
7
256
46
9
8
35
1.67
97247--97281
11
3.2
11
83
0
52
77
17
5
0
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99399--99423
3
8.3
3
100
0
50
68
0
32
0
0.90
103712--103798
42
2.1
42
95
0
156
37
5
17
39
1.73
105765--105838
22
3.4
21
80
9
69
37
12
8
41
1.72
105778--105838
22
2.9
21
85
4
77
39
11
9
39
1.75
105866--105926
21
2.8
21
82
5
68
32
14
6
45
1.71
106777--106806
2
15.0
2
100
0
60
50
0
0
50
1.00
115517--115565
21
2.3
21
89
0
80
8
26
53
12
1.66
115699--115765
26
2.5
27
92
2
109
14
19
26
38
1.91
119272--119310
19
2.1
19
85
9
53
53
2
23
20
1.57
119291--119808
47
11.0
47
94
0
867
45
4
20
29
1.70
119725--119897
83
2.0
85
86
7
246
45
6
19
28
1.74
123469--123552
35
2.4
35
93
0
141
29
17
13
39
1.88
132339--132399
26
2.3
27
88
2
88
13
19
26
40
1.88
132885--132920
19
1.9
18
88
5
54
41
2
22
33
1.68
137776--137843
35
1.9
35
96
0
127
50
1
22
26
1.58
137811--138237
47
9.0
47
97
0
782
46
3
20
29
1.69
137811--138237
189
2.3
189
97
0
802
46
3
20
29
1.69
138201--138273
36
2.0
36
91
0
119
46
4
17
31
1.67
138154--138324
83
2.0
85
86
3
238
46
5
18
29
1.71
138311--138418
44
2.5
42
79
10
110
57
4
17
20
1.57
148574--148686
21
5.4
21
91
2
158
28
18
26
26
1.98
149605--149659
27
2.2
27
84
12
73
50
10
27
10
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
152561--152600
15
2.6
16
92
4
64
15
7
12
65
1.47
153011--153057
26
1.9
24
87
12
69
27
27
4
40
1.75

Tables:   1

The End!