Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018797.1 Corchorus olitorius cultivar O-4 contig18830, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34090

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4213--4244
16
1.9
17
93
6
57
81
0
9
9
0.88
9670--9705
19
1.9
18
88
5
54
27
22
8
41
1.82
10824--10941
59
2.0
59
96
0
218
21
15
11
51
1.75
13094--13141
13
3.7
13
77
0
60
16
14
8
60
1.57
13128--13271
31
4.6
31
75
6
139
15
14
9
61
1.57
13169--13205
18
2.0
18
89
5
56
13
16
5
64
1.45
13207--13254
13
3.7
13
85
0
51
12
18
10
58
1.62
13119--13301
93
2.0
93
83
4
235
16
14
9
59
1.61
13157--13302
62
2.4
61
79
7
152
17
15
8
58
1.61
15454--15489
19
1.9
18
88
5
54
33
22
2
41
1.68
17026--17066
21
2.0
21
90
0
64
39
12
19
29
1.88
22071--22124
19
2.6
21
77
19
60
38
18
3
38
1.69
23990--24032
22
2.0
22
95
0
77
23
34
23
18
1.96
25856--25935
42
1.9
42
97
0
151
33
6
21
38
1.78
26103--26140
8
4.6
8
87
6
58
7
13
0
78
0.94
26110--26144
17
2.1
17
94
0
61
5
14
0
80
0.89
30367--30515
30
5.0
30
86
3
210
45
20
13
20
1.84
30588--30628
20
2.0
20
90
0
64
29
21
24
24
1.99
31155--31604
69
6.5
69
93
0
722
29
16
28
26
1.97
33221--33295
8
9.6
8
78
16
59
8
0
12
80
0.92
33222--33286
15
4.4
15
88
9
98
9
0
12
78
0.96
33209--33296
23
3.9
22
77
14
65
9
0
13
77
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33223--33286
23
2.9
22
88
6
94
9
0
12
78
0.97
33687--33724
8
4.8
8
86
0
58
13
13
0
73
1.09

Tables:   1

The End!