Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018826.1 Corchorus olitorius cultivar O-4 contig18859, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10691

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1921--1985
31
2.1
31
85
0
85
29
13
23
33
1.93
3190--4437
30
41.5
29
82
4
1010
23
6
42
26
1.79
3190--4360
60
19.5
60
85
1
1180
23
7
43
26
1.79
3180--4360
90
13.1
90
85
1
1148
23
7
42
26
1.79
4125--4474
90
4.0
90
82
5
304
26
6
40
27
1.79
5397--5446
19
2.7
19
77
17
52
32
4
2
62
1.25
6354--6413
25
2.4
25
100
0
120
41
21
5
31
1.75
7690--7714
13
1.9
13
100
0
50
24
20
0
56
1.43
9055--9089
18
1.9
18
100
0
70
57
0
8
34
1.29
10645--10683
2
19.5
2
100
0
78
48
0
0
51
1.00

Tables:   1

The End!