Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018941.1 Corchorus olitorius cultivar O-4 contig18974, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21496

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2840--2867
13
2.2
13
100
0
56
14
0
25
60
1.34
4503--4551
22
2.2
22
88
0
71
40
36
10
12
1.77
7737--7816
23
3.5
23
82
3
81
41
13
7
37
1.73
7737--7985
22
11.7
22
71
12
137
38
16
7
37
1.77
7860--7979
64
1.9
64
87
3
179
39
15
8
36
1.78
8122--8418
22
13.5
22
69
14
132
34
13
11
40
1.80
8239--8353
21
5.1
24
74
19
90
31
14
11
42
1.81
8458--8545
22
4.0
21
78
8
95
31
21
11
35
1.89
8546--8687
22
6.4
22
77
10
128
36
16
8
38
1.79
8489--8598
56
1.9
57
85
1
150
32
20
10
36
1.86
8466--8622
78
2.0
78
86
2
217
32
20
8
38
1.84
8560--8687
68
1.9
69
83
4
170
38
14
9
38
1.78
8633--8702
22
3.2
22
81
2
79
40
12
10
37
1.77
8681--8736
19
2.8
20
72
5
60
41
17
10
30
1.84
8986--9039
26
2.0
27
96
3
101
48
7
0
44
1.31
9329--9374
21
2.2
21
84
0
56
36
8
15
39
1.78
9338--9387
21
2.3
21
89
3
73
26
16
18
40
1.90
9456--9640
22
8.4
22
75
9
155
41
10
15
33
1.81
9458--9624
43
3.8
44
77
4
149
40
10
15
32
1.82
9711--9815
22
4.8
22
72
0
84
33
10
18
38
1.85
19918--19974
28
2.0
28
100
0
114
21
17
31
29
1.96

Tables:   1

The End!