genome.fa.s18946.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018946.1 Corchorus olitorius cultivar O-4 contig18979, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69343

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2042--2083	15	2.8	16	82	17	54	21	2	40	35	1.66
2257--2294	14	2.8	14	80	19	53	55	2	42	0	1.14
3258--3479	34	6.1	34	75	15	176	27	16	17	38	1.91
3263--3402	70	1.9	73	84	10	187	29	15	16	38	1.90
3263--3411	41	4.0	40	80	10	138	27	16	16	39	1.90
4429--5057	218	2.9	217	91	1	961	36	6	21	35	1.80
5899--5948	25	2.0	25	96	0	91	54	16	6	24	1.64
5924--6501	220	2.6	223	88	2	824	36	21	6	35	1.79
8229--8253	4	6.2	4	100	0	50	76	0	0	24	0.80
10176--10357	30	6.1	30	86	10	273	25	24	9	40	1.86
10176--10347	60	2.9	60	97	1	319	25	25	9	40	1.86
10897--14725	239	16.0	239	90	1	5890	34	20	14	30	1.93
10897--14725	479	8.0	478	89	1	5878	34	20	14	30	1.93
10897--14725	718	5.3	717	91	0	5919	34	20	14	30	1.93
16724--16751	13	2.2	13	100	0	56	21	7	32	39	1.80
19383--19426	2	22.5	2	83	4	54	47	0	0	52	1.00
19391--19431	21	1.9	22	90	5	66	51	0	2	46	1.14
19948--19991	19	2.3	19	80	0	52	43	0	45	11	1.40
22757--22795	18	2.2	18	90	0	60	35	2	2	58	1.25
22769--22804	18	2.0	18	88	0	54	41	2	0	55	1.14
23329--23363	18	1.9	18	88	0	52	42	2	2	51	1.31
25895--25944	18	2.8	18	96	0	91	14	4	14	68	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36938--36972	18	1.9	18	88	0	52	42	2	2	51	1.31
38470--38504	18	1.9	18	88	0	52	42	0	5	51	1.25
45425--45459	18	1.9	18	88	0	52	42	2	2	51	1.31
46755--46789	18	1.9	18	88	0	52	42	2	2	51	1.31
48905--48949	23	2.0	23	83	8	58	60	2	0	37	1.09
48916--48959	23	2.0	23	86	4	63	59	0	2	38	1.10
51657--51931	138	2.0	138	96	0	505	24	17	17	41	1.90
56566--56895	178	1.9	178	87	3	486	35	16	13	34	1.88
56563--56944	178	2.1	177	83	5	475	37	15	13	33	1.87
57395--57505	55	2.0	55	100	0	222	34	23	1	40	1.65
57570--57650	42	1.9	42	94	0	144	30	6	16	46	1.71
58384--58417	18	1.9	17	88	5	50	52	11	2	32	1.53
66411--66500	30	3.0	30	91	0	153	23	22	3	51	1.63
67814--67842	14	2.1	14	100	0	58	48	10	0	41	1.37
68640--68964	164	2.0	161	96	1	596	39	13	11	35	1.82

Tables:   1

The End!