Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019000.1 Corchorus olitorius cultivar O-4 contig19033, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136066

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3245--3282
19
2.0
19
94
0
67
68
18
0
13
1.21
3267--3296
12
2.4
12
94
5
51
83
13
0
3
0.77
3247--3291
19
2.3
19
84
3
54
73
20
0
6
1.05
3313--3451
35
3.9
35
79
9
122
30
15
15
38
1.89
5445--5487
20
2.1
21
91
4
70
27
20
13
37
1.91
5595--5640
10
4.6
10
88
0
74
36
19
10
32
1.87
8142--8203
31
2.0
31
96
0
115
9
11
37
41
1.74
8152--8203
16
3.3
16
69
15
54
7
11
32
48
1.68
9863--9955
33
2.7
35
85
8
127
29
13
20
36
1.91
9862--9955
36
2.7
34
86
6
127
29
13
20
36
1.91
10954--10988
13
2.8
13
91
4
54
34
22
5
37
1.78
10954--10993
12
3.2
12
86
6
53
35
20
10
35
1.86
14598--14649
26
2.0
26
88
0
77
61
7
9
21
1.51
15924--16075
76
2.0
76
80
10
168
17
26
30
26
1.97
17000--17057
28
2.1
28
80
6
64
18
18
13
48
1.81
18588--18661
28
2.7
27
75
10
78
18
14
25
40
1.89
24081--24121
21
1.9
22
90
5
66
21
26
26
24
2.00
25892--25943
26
2.0
26
84
0
68
59
7
11
21
1.56
27218--27369
76
2.0
76
81
7
175
16
28
29
25
1.97
27391--27454
25
2.6
25
97
2
121
9
25
15
50
1.74
28579--28603
6
4.2
6
100
0
50
0
16
0
84
0.63
30377--30418
15
2.7
15
92
3
66
11
9
14
64
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33375--33429
21
2.6
21
88
0
74
16
49
21
12
1.79
33781--33810
15
2.1
15
93
6
53
13
20
3
63
1.43
37633--37674
15
2.7
15
92
3
66
11
9
14
64
1.50
45569--45629
25
2.3
26
83
13
79
59
9
13
18
1.61
45670--45708
20
2.0
20
90
5
62
69
17
2
10
1.28
52978--53014
18
2.1
18
90
10
58
45
0
18
35
1.50
52969--53026
19
2.8
21
75
20
59
43
3
17
36
1.66
62138--62302
60
2.7
59
87
6
226
35
18
17
28
1.93
62203--62304
31
3.4
31
69
18
97
39
17
17
25
1.92
62347--62505
60
2.7
60
84
2
203
25
20
20
33
1.97
66340--66365
11
2.4
11
100
0
52
7
15
7
69
1.35
67125--67166
15
2.7
15
92
3
66
11
9
14
64
1.50
75084--75180
26
3.3
29
83
12
119
37
8
7
47
1.61
78286--78322
17
2.2
17
90
4
58
13
10
0
75
1.04
80068--80128
30
2.0
30
84
6
79
44
4
14
36
1.67
80079--80118
19
2.2
19
90
4
64
45
5
15
35
1.68
83315--83355
20
2.0
22
90
9
68
34
19
24
21
1.97
83316--83364
20
2.3
20
83
13
55
30
24
26
18
1.98
85063--85290
115
2.0
114
80
9
259
39
12
14
34
1.83
96987--97021
1
35.0
1
91
0
52
2
94
0
2
0.37
129261--129298
17
2.2
17
90
0
58
31
5
21
42
1.75
129544--129678
68
2.0
68
91
2
218
23
14
14
46
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
129962--130008
25
1.9
24
83
12
60
27
2
8
61
1.36
130515--130561
23
2.0
23
100
0
94
21
17
12
48
1.79
131747--131792
24
1.9
24
82
8
58
36
4
2
56
1.31
131910--131938
2
14.5
2
100
0
58
48
0
0
51
1.00
134272--134315
6
7.2
6
97
2
79
34
15
0
50
1.45
134293--134919
306
2.0
306
96
1
1150
39
14
6
39
1.72

Tables:   1

The End!