Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019099.1 Corchorus olitorius cultivar O-4 contig19132, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7590

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1274--1303
15
1.9
16
93
6
53
53
3
0
43
1.17
1807--1856
16
3.1
15
78
16
55
56
4
2
38
1.30
1875--2378
143
3.6
142
85
5
716
30
14
21
33
1.94
5310--5396
26
3.3
26
91
0
138
37
21
13
26
1.91
5310--6287
52
19.8
52
80
12
1105
35
23
13
27
1.92
5379--5413
17
2.1
17
94
0
61
37
28
11
22
1.89
5396--5576
26
7.0
26
89
0
245
36
23
12
28
1.90
5580--5671
26
3.5
26
93
0
157
34
23
14
27
1.93
5653--5718
16
4.2
16
73
11
73
40
15
13
30
1.85
5687--5762
26
2.9
26
98
0
143
36
22
14
26
1.92
5747--5779
17
1.9
17
100
0
66
36
24
12
27
1.91
5764--6012
26
9.7
26
92
3
414
34
22
14
28
1.93
5996--6029
17
2.0
17
94
0
59
38
26
11
23
1.89
5944--6081
68
2.0
69
92
1
233
36
21
13
28
1.91
5580--6282
172
4.1
172
85
9
969
35
23
13
27
1.92
6012--6195
26
7.1
26
90
0
251
35
24
11
27
1.91
6152--6238
43
2.0
43
95
0
156
35
25
14
24
1.94
6179--6212
17
2.0
17
100
0
68
35
23
17
23
1.95
6195--6287
26
3.6
26
89
0
132
35
25
12
25
1.92
6101--6287
95
2.0
95
89
0
284
36
25
12
25
1.91
6360--6480
33
3.7
33
98
0
233
27
21
19
31
1.98

Tables:   1

The End!